Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
VPS8Q8N3P4 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC24.62■■□□□ 1.53
VPS8Q8N3P4 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
VPS8Q8N3P4 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
VPS8Q8N3P4 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
VPS8Q8N3P4 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC24.62■■□□□ 1.53
VPS8Q8N3P4 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC24.62■■□□□ 1.53
VPS8Q8N3P4 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 AC079776.1-201ENST00000401540 1152 ntBASIC24.61■■□□□ 1.53
VPS8Q8N3P4 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 MDH2-205ENST00000461263 648 ntTSL 2 BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 RN7SL752P-201ENST00000463779 287 ntBASIC24.61■■□□□ 1.53
VPS8Q8N3P4 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 GPR39-203ENST00000622084 900 ntTSL 5 BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 HLA-DQB2-231ENST00000435145 2026 ntBASIC24.61■■□□□ 1.53
VPS8Q8N3P4 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 TEX30-203ENST00000376022 828 ntTSL 2 BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 WBP2-203ENST00000433525 928 ntTSL 2 BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 RPL13AP25-201ENST00000484130 612 ntBASIC24.61■■□□□ 1.53
VPS8Q8N3P4 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 AC008735.3-201ENST00000596646 500 ntBASIC24.61■■□□□ 1.53
VPS8Q8N3P4 AC010319.3-201ENST00000597028 470 ntBASIC24.61■■□□□ 1.53
VPS8Q8N3P4 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 AC005252.2-201ENST00000624630 1141 ntBASIC24.61■■□□□ 1.53
VPS8Q8N3P4 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
VPS8Q8N3P4 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 KRT8P22-201ENST00000562317 1415 ntBASIC24.6■■□□□ 1.53
VPS8Q8N3P4 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 TTTY23B-201ENST00000442790 549 ntBASIC24.6■■□□□ 1.53
VPS8Q8N3P4 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC24.6■■□□□ 1.53
VPS8Q8N3P4 AC092127.1-201ENST00000567093 3455 ntBASIC24.6■■□□□ 1.53
VPS8Q8N3P4 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 AC105250.1-201ENST00000509378 2057 ntBASIC24.59■■□□□ 1.53
VPS8Q8N3P4 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 DKFZP434H168-201ENST00000567381 1905 ntBASIC24.59■■□□□ 1.53
VPS8Q8N3P4 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 PGF-202ENST00000405431 666 ntTSL 5 BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 SOCS2P1-201ENST00000417727 557 ntBASIC24.59■■□□□ 1.53
VPS8Q8N3P4 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
VPS8Q8N3P4 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms