Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USP54Q70EL1 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
USP54Q70EL1 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC20.77■□□□□ 0.92
USP54Q70EL1 AMT-224ENST00000635808 1610 ntTSL 5 BASIC20.77■□□□□ 0.92
USP54Q70EL1 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP54Q70EL1 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USP54Q70EL1 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP54Q70EL1 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
USP54Q70EL1 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
USP54Q70EL1 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
USP54Q70EL1 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP54Q70EL1 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
USP54Q70EL1 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC20.77■□□□□ 0.91
USP54Q70EL1 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
USP54Q70EL1 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
USP54Q70EL1 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC20.77■□□□□ 0.91
USP54Q70EL1 CSH2-202ENST00000345366 598 ntTSL 5 BASIC20.77■□□□□ 0.91
USP54Q70EL1 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
USP54Q70EL1 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
USP54Q70EL1 RGS5-214ENST00000429865 754 ntTSL 3 BASIC20.77■□□□□ 0.91
USP54Q70EL1 PFN2-205ENST00000461868 613 ntTSL 2 BASIC20.77■□□□□ 0.91
USP54Q70EL1 AL391280.1-201ENST00000506969 1062 ntBASIC20.77■□□□□ 0.91
USP54Q70EL1 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC20.77■□□□□ 0.91
USP54Q70EL1 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC20.77■□□□□ 0.91
USP54Q70EL1 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC20.77■□□□□ 0.91
USP54Q70EL1 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP54Q70EL1 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP54Q70EL1 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP54Q70EL1 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC20.76■□□□□ 0.91
USP54Q70EL1 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP54Q70EL1 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC20.76■□□□□ 0.91
USP54Q70EL1 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC20.76■□□□□ 0.91
USP54Q70EL1 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.76■□□□□ 0.91
USP54Q70EL1 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC20.76■□□□□ 0.91
USP54Q70EL1 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP54Q70EL1 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP54Q70EL1 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP54Q70EL1 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP54Q70EL1 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC20.76■□□□□ 0.91
USP54Q70EL1 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC20.76■□□□□ 0.91
USP54Q70EL1 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP54Q70EL1 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
USP54Q70EL1 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
USP54Q70EL1 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP54Q70EL1 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC20.76■□□□□ 0.91
USP54Q70EL1 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
USP54Q70EL1 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.76■□□□□ 0.91
USP54Q70EL1 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
USP54Q70EL1 BTBD6P1-201ENST00000412176 1267 ntBASIC20.76■□□□□ 0.91
USP54Q70EL1 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
USP54Q70EL1 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC20.76■□□□□ 0.91
USP54Q70EL1 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC20.76■□□□□ 0.91
USP54Q70EL1 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
USP54Q70EL1 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC20.76■□□□□ 0.91
USP54Q70EL1 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC20.76■□□□□ 0.91
USP54Q70EL1 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP54Q70EL1 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC20.76■□□□□ 0.91
USP54Q70EL1 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP54Q70EL1 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP54Q70EL1 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP54Q70EL1 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP54Q70EL1 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP54Q70EL1 FRMD6-AS1-201ENST00000617151 2229 ntBASIC20.75■□□□□ 0.91
USP54Q70EL1 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC20.75■□□□□ 0.91
USP54Q70EL1 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
USP54Q70EL1 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
USP54Q70EL1 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP54Q70EL1 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP54Q70EL1 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP54Q70EL1 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP54Q70EL1 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP54Q70EL1 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC20.75■□□□□ 0.91
USP54Q70EL1 NME6-203ENST00000415644 849 ntTSL 2 BASIC20.75■□□□□ 0.91
USP54Q70EL1 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC20.75■□□□□ 0.91
USP54Q70EL1 AC114812.1-204ENST00000449669 728 ntBASIC20.75■□□□□ 0.91
USP54Q70EL1 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC20.75■□□□□ 0.91
USP54Q70EL1 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC20.75■□□□□ 0.91
USP54Q70EL1 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC20.75■□□□□ 0.91
USP54Q70EL1 RHOQP1-201ENST00000555758 579 ntBASIC20.75■□□□□ 0.91
USP54Q70EL1 ARL16-210ENST00000574938 751 ntTSL 2 BASIC20.75■□□□□ 0.91
USP54Q70EL1 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC20.75■□□□□ 0.91
USP54Q70EL1 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
USP54Q70EL1 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC20.75■□□□□ 0.91
USP54Q70EL1 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP54Q70EL1 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP54Q70EL1 AC007787.1-201ENST00000588095 1583 ntBASIC20.75■□□□□ 0.91
USP54Q70EL1 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
USP54Q70EL1 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP54Q70EL1 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC20.75■□□□□ 0.91
USP54Q70EL1 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC20.75■□□□□ 0.91
USP54Q70EL1 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP54Q70EL1 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.75■□□□□ 0.91
USP54Q70EL1 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC20.75■□□□□ 0.91
USP54Q70EL1 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC20.74■□□□□ 0.91
USP54Q70EL1 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
USP54Q70EL1 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms