Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CTR9Q6PD62 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CTR9Q6PD62 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC18.96■□□□□ 0.63
CTR9Q6PD62 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CTR9Q6PD62 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CTR9Q6PD62 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 AC018892.3-201ENST00000623986 2499 ntBASIC18.95■□□□□ 0.62
CTR9Q6PD62 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 PHKG1P2-201ENST00000457537 863 ntBASIC18.95■□□□□ 0.62
CTR9Q6PD62 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 GRN-214ENST00000589265 1632 ntTSL 5 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 AC007541.1-201ENST00000570282 1469 ntBASIC18.95■□□□□ 0.62
CTR9Q6PD62 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.95■□□□□ 0.62
CTR9Q6PD62 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTR9Q6PD62 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CTR9Q6PD62 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC18.94■□□□□ 0.62
CTR9Q6PD62 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CTR9Q6PD62 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CTR9Q6PD62 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
CTR9Q6PD62 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC18.94■□□□□ 0.62
CTR9Q6PD62 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.94■□□□□ 0.62
CTR9Q6PD62 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
CTR9Q6PD62 TARDBPP1-201ENST00000442013 1203 ntBASIC18.94■□□□□ 0.62
CTR9Q6PD62 API5-211ENST00000534695 560 ntTSL 5 BASIC18.94■□□□□ 0.62
CTR9Q6PD62 AC092337.1-201ENST00000568699 1129 ntBASIC18.94■□□□□ 0.62
CTR9Q6PD62 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC18.94■□□□□ 0.62
CTR9Q6PD62 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC18.94■□□□□ 0.62
CTR9Q6PD62 COX11-202ENST00000571584 1108 ntTSL 2 BASIC18.94■□□□□ 0.62
CTR9Q6PD62 AL132655.2-201ENST00000596276 594 ntBASIC18.94■□□□□ 0.62
CTR9Q6PD62 LINC01115-203ENST00000606068 577 ntBASIC18.94■□□□□ 0.62
CTR9Q6PD62 AL662799.1-202ENST00000614205 422 ntBASIC18.94■□□□□ 0.62
CTR9Q6PD62 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CTR9Q6PD62 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CTR9Q6PD62 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.94■□□□□ 0.62
CTR9Q6PD62 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.94■□□□□ 0.62
CTR9Q6PD62 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CTR9Q6PD62 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CTR9Q6PD62 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CTR9Q6PD62 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CTR9Q6PD62 CYP2T1P-202ENST00000641596 2535 ntBASIC18.94■□□□□ 0.62
CTR9Q6PD62 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CTR9Q6PD62 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CTR9Q6PD62 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CTR9Q6PD62 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
CTR9Q6PD62 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.93■□□□□ 0.62
CTR9Q6PD62 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CTR9Q6PD62 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CTR9Q6PD62 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CTR9Q6PD62 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CTR9Q6PD62 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CTR9Q6PD62 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.93■□□□□ 0.62
CTR9Q6PD62 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CTR9Q6PD62 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CTR9Q6PD62 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CTR9Q6PD62 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
CTR9Q6PD62 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC18.93■□□□□ 0.62
CTR9Q6PD62 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC18.93■□□□□ 0.62
CTR9Q6PD62 FTH1-202ENST00000526640 786 ntTSL 2 BASIC18.93■□□□□ 0.62
CTR9Q6PD62 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC18.93■□□□□ 0.62
CTR9Q6PD62 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.93■□□□□ 0.62
CTR9Q6PD62 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.93■□□□□ 0.62
CTR9Q6PD62 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CTR9Q6PD62 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC18.93■□□□□ 0.62
CTR9Q6PD62 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CTR9Q6PD62 AF228730.6-201ENST00000641497 218 ntBASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms