Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
KRT39Q6A163 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.25■□□□□ 0.35
KRT39Q6A163 MDH2-205ENST00000461263 648 ntTSL 2 BASIC17.25■□□□□ 0.35
KRT39Q6A163 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.25■□□□□ 0.35
KRT39Q6A163 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.25■□□□□ 0.35
KRT39Q6A163 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
KRT39Q6A163 AL079307.3-201ENST00000556114 283 ntBASIC17.25■□□□□ 0.35
KRT39Q6A163 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.25■□□□□ 0.35
KRT39Q6A163 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.25■□□□□ 0.35
KRT39Q6A163 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.25■□□□□ 0.35
KRT39Q6A163 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC17.25■□□□□ 0.35
KRT39Q6A163 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC17.25■□□□□ 0.35
KRT39Q6A163 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.25■□□□□ 0.35
KRT39Q6A163 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.25■□□□□ 0.35
KRT39Q6A163 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC17.25■□□□□ 0.35
KRT39Q6A163 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.25■□□□□ 0.35
KRT39Q6A163 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
KRT39Q6A163 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 KRT8P12-202ENST00000472924 1397 ntBASIC17.25■□□□□ 0.35
KRT39Q6A163 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC17.25■□□□□ 0.35
KRT39Q6A163 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
KRT39Q6A163 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.25■□□□□ 0.35
KRT39Q6A163 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
KRT39Q6A163 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.24■□□□□ 0.35
KRT39Q6A163 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.24■□□□□ 0.35
KRT39Q6A163 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 CICP6-201ENST00000457191 2729 ntBASIC17.24■□□□□ 0.35
KRT39Q6A163 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
KRT39Q6A163 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
KRT39Q6A163 DKFZP434H168-201ENST00000567381 1905 ntBASIC17.24■□□□□ 0.35
KRT39Q6A163 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 CETN4P-206ENST00000642099 2168 ntBASIC17.24■□□□□ 0.35
KRT39Q6A163 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 RAC2-202ENST00000401529 569 ntTSL 4 BASIC17.24■□□□□ 0.35
KRT39Q6A163 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.24■□□□□ 0.35
KRT39Q6A163 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.24■□□□□ 0.35
KRT39Q6A163 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.24■□□□□ 0.35
KRT39Q6A163 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.24■□□□□ 0.35
KRT39Q6A163 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.24■□□□□ 0.35
KRT39Q6A163 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.24■□□□□ 0.35
KRT39Q6A163 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.24■□□□□ 0.35
KRT39Q6A163 AL589739.1-201ENST00000607720 493 ntBASIC17.24■□□□□ 0.35
KRT39Q6A163 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.24■□□□□ 0.35
KRT39Q6A163 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
KRT39Q6A163 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
KRT39Q6A163 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.24■□□□□ 0.35
KRT39Q6A163 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.24■□□□□ 0.35
KRT39Q6A163 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
KRT39Q6A163 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC17.24■□□□□ 0.35
KRT39Q6A163 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.24■□□□□ 0.35
KRT39Q6A163 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
KRT39Q6A163 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
KRT39Q6A163 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
KRT39Q6A163 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
KRT39Q6A163 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
KRT39Q6A163 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
KRT39Q6A163 KRT18P28-201ENST00000453838 1332 ntBASIC17.23■□□□□ 0.35
KRT39Q6A163 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
KRT39Q6A163 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.23■□□□□ 0.35
KRT39Q6A163 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC17.23■□□□□ 0.35
KRT39Q6A163 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
KRT39Q6A163 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
KRT39Q6A163 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
KRT39Q6A163 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
KRT39Q6A163 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
KRT39Q6A163 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
KRT39Q6A163 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
KRT39Q6A163 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
KRT39Q6A163 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms