Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 AL033527.5-201ENST00000641382 801 ntBASIC15.41■□□□□ 0.06
COL28A1Q2UY09 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 LINC00554-201ENST00000564841 3011 ntBASIC15.41■□□□□ 0.06
COL28A1Q2UY09 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 AGK-211ENST00000629555 2765 ntTSL 5 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 AC018665.1-201ENST00000622927 1362 ntBASIC15.4■□□□□ 0.06
COL28A1Q2UY09 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 PDIA3P1-201ENST00000471856 1510 ntBASIC15.4■□□□□ 0.06
COL28A1Q2UY09 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 AC099336.1-201ENST00000417053 1171 ntBASIC15.4■□□□□ 0.06
COL28A1Q2UY09 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 AL512361.1-201ENST00000554200 418 ntBASIC15.4■□□□□ 0.06
COL28A1Q2UY09 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 EMC4-209ENST00000559421 497 ntTSL 2 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL28A1Q2UY09 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 AL645728.1-201ENST00000366221 2101 ntBASIC15.39■□□□□ 0.05
COL28A1Q2UY09 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 MIR663B-201ENST00000408361 115 ntBASIC15.39■□□□□ 0.05
COL28A1Q2UY09 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 FAM21FP-201ENST00000426241 1131 ntBASIC15.39■□□□□ 0.05
COL28A1Q2UY09 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 AC114501.2-201ENST00000439631 535 ntBASIC15.39■□□□□ 0.05
COL28A1Q2UY09 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 AC091167.2-201ENST00000579581 588 ntBASIC15.39■□□□□ 0.05
COL28A1Q2UY09 MPDU1-223ENST00000582151 728 ntBASIC15.39■□□□□ 0.05
COL28A1Q2UY09 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms