Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
UBA52P62987 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.9□□□□□ -0.18
UBA52P62987 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 BANP-203ENST00000393207 2438 ntTSL 2 BASIC13.9□□□□□ -0.18
UBA52P62987 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
UBA52P62987 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.9□□□□□ -0.18
UBA52P62987 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
UBA52P62987 AP002414.1-201ENST00000391405 1147 ntBASIC13.9□□□□□ -0.18
UBA52P62987 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
UBA52P62987 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC13.9□□□□□ -0.18
UBA52P62987 SYS1-203ENST00000414310 795 ntTSL 3 BASIC13.9□□□□□ -0.18
UBA52P62987 FAM8A3P-201ENST00000427218 844 ntBASIC13.9□□□□□ -0.18
UBA52P62987 FAM58CP-201ENST00000435741 640 ntBASIC13.9□□□□□ -0.18
UBA52P62987 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC13.9□□□□□ -0.18
UBA52P62987 ACTG1P14-201ENST00000446382 1122 ntBASIC13.9□□□□□ -0.18
UBA52P62987 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC13.9□□□□□ -0.18
UBA52P62987 IGHV3-52-201ENST00000519770 353 ntBASIC13.9□□□□□ -0.18
UBA52P62987 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC13.9□□□□□ -0.18
UBA52P62987 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
UBA52P62987 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC13.9□□□□□ -0.18
UBA52P62987 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
UBA52P62987 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC13.9□□□□□ -0.18
UBA52P62987 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC13.9□□□□□ -0.18
UBA52P62987 AC011467.4-201ENST00000594891 528 ntBASIC13.9□□□□□ -0.18
UBA52P62987 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC13.9□□□□□ -0.18
UBA52P62987 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC13.9□□□□□ -0.18
UBA52P62987 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC13.9□□□□□ -0.18
UBA52P62987 AQP6-205ENST00000618286 829 ntTSL 5 BASIC13.9□□□□□ -0.18
UBA52P62987 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
UBA52P62987 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC13.9□□□□□ -0.18
UBA52P62987 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.9□□□□□ -0.18
UBA52P62987 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC13.9□□□□□ -0.18
UBA52P62987 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
UBA52P62987 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.9□□□□□ -0.18
UBA52P62987 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
UBA52P62987 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
UBA52P62987 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC13.9□□□□□ -0.18
UBA52P62987 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC13.9□□□□□ -0.18
UBA52P62987 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
UBA52P62987 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.19
UBA52P62987 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.19
UBA52P62987 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC13.9□□□□□ -0.19
UBA52P62987 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
UBA52P62987 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.19
UBA52P62987 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
UBA52P62987 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
UBA52P62987 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.19
UBA52P62987 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
UBA52P62987 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
UBA52P62987 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
UBA52P62987 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
UBA52P62987 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC13.89□□□□□ -0.19
UBA52P62987 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
UBA52P62987 C8orf49-201ENST00000525043 1968 ntBASIC13.89□□□□□ -0.19
UBA52P62987 AC097637.2-201ENST00000624096 1997 ntBASIC13.89□□□□□ -0.19
UBA52P62987 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.89□□□□□ -0.19
UBA52P62987 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
UBA52P62987 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
UBA52P62987 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
UBA52P62987 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
UBA52P62987 PC-214ENST00000628663 1470 ntTSL 5 BASIC13.89□□□□□ -0.19
UBA52P62987 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
UBA52P62987 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
UBA52P62987 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC13.89□□□□□ -0.19
UBA52P62987 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC13.89□□□□□ -0.19
UBA52P62987 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
UBA52P62987 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
UBA52P62987 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
UBA52P62987 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
UBA52P62987 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
UBA52P62987 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
UBA52P62987 AL645728.1-201ENST00000366221 2101 ntBASIC13.89□□□□□ -0.19
UBA52P62987 MIR770-201ENST00000390219 98 ntBASIC13.89□□□□□ -0.19
UBA52P62987 PTCHD3P3-201ENST00000403073 906 ntBASIC13.89□□□□□ -0.19
UBA52P62987 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC13.89□□□□□ -0.19
UBA52P62987 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC13.89□□□□□ -0.19
UBA52P62987 AP000344.2-201ENST00000512987 629 ntBASIC13.89□□□□□ -0.19
UBA52P62987 POLD4-207ENST00000531239 584 ntTSL 2 BASIC13.89□□□□□ -0.19
UBA52P62987 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC13.89□□□□□ -0.19
UBA52P62987 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
UBA52P62987 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
UBA52P62987 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
UBA52P62987 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms