Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC13.03□□□□□ -0.32
LMO4P61968 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC13.03□□□□□ -0.32
LMO4P61968 AC120045.2-201ENST00000567334 178 ntBASIC13.03□□□□□ -0.32
LMO4P61968 NAA38-206ENST00000576384 424 ntTSL 2 BASIC13.03□□□□□ -0.32
LMO4P61968 MIR5189-201ENST00000577370 114 ntBASIC13.03□□□□□ -0.32
LMO4P61968 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC13.03□□□□□ -0.32
LMO4P61968 AC233724.13-201ENST00000598383 410 ntBASIC13.03□□□□□ -0.32
LMO4P61968 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC13.03□□□□□ -0.32
LMO4P61968 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
LMO4P61968 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.03□□□□□ -0.32
LMO4P61968 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC13.03□□□□□ -0.32
LMO4P61968 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC13.03□□□□□ -0.32
LMO4P61968 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 CYP2AB1P-202ENST00000454440 1456 ntBASIC13.03□□□□□ -0.32
LMO4P61968 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
LMO4P61968 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC13.03□□□□□ -0.32
LMO4P61968 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LMO4P61968 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
LMO4P61968 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
LMO4P61968 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC13.02□□□□□ -0.32
LMO4P61968 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC13.02□□□□□ -0.32
LMO4P61968 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
LMO4P61968 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
LMO4P61968 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
LMO4P61968 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
LMO4P61968 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.32
LMO4P61968 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
LMO4P61968 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
LMO4P61968 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
LMO4P61968 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LMO4P61968 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC13.02□□□□□ -0.33
LMO4P61968 RAC2-202ENST00000401529 569 ntTSL 4 BASIC13.02□□□□□ -0.33
LMO4P61968 BOLA2P3-201ENST00000404566 256 ntBASIC13.02□□□□□ -0.33
LMO4P61968 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
LMO4P61968 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC13.02□□□□□ -0.33
LMO4P61968 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC13.02□□□□□ -0.33
LMO4P61968 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LMO4P61968 KRT43P-201ENST00000434019 910 ntBASIC13.02□□□□□ -0.33
LMO4P61968 RPS2P32-201ENST00000439199 892 ntBASIC13.02□□□□□ -0.33
LMO4P61968 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
LMO4P61968 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC13.02□□□□□ -0.33
LMO4P61968 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC13.02□□□□□ -0.33
LMO4P61968 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC13.02□□□□□ -0.33
LMO4P61968 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.02□□□□□ -0.33
LMO4P61968 AC119751.2-201ENST00000504529 210 ntBASIC13.02□□□□□ -0.33
LMO4P61968 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
LMO4P61968 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC13.02□□□□□ -0.33
LMO4P61968 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC13.02□□□□□ -0.33
LMO4P61968 TDH-203ENST00000531764 1110 ntBASIC13.02□□□□□ -0.33
LMO4P61968 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC13.02□□□□□ -0.33
LMO4P61968 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC13.02□□□□□ -0.33
LMO4P61968 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LMO4P61968 MIR4259-201ENST00000584466 101 ntBASIC13.02□□□□□ -0.33
LMO4P61968 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC13.02□□□□□ -0.33
LMO4P61968 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC13.02□□□□□ -0.33
LMO4P61968 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC13.02□□□□□ -0.33
LMO4P61968 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
LMO4P61968 Six3os1_5.1-201ENST00000611000 271 ntBASIC13.02□□□□□ -0.33
LMO4P61968 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC13.02□□□□□ -0.33
LMO4P61968 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC13.02□□□□□ -0.33
LMO4P61968 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LMO4P61968 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LMO4P61968 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LMO4P61968 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
LMO4P61968 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
LMO4P61968 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC13.02□□□□□ -0.33
LMO4P61968 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
LMO4P61968 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LMO4P61968 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
LMO4P61968 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.33
LMO4P61968 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC13.02□□□□□ -0.33
LMO4P61968 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC13.02□□□□□ -0.33
LMO4P61968 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC13.02□□□□□ -0.33
LMO4P61968 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LMO4P61968 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LMO4P61968 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
LMO4P61968 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LMO4P61968 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
LMO4P61968 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LMO4P61968 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC13.01□□□□□ -0.33
LMO4P61968 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
LMO4P61968 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LMO4P61968 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LMO4P61968 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LMO4P61968 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
LMO4P61968 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
LMO4P61968 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LMO4P61968 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LMO4P61968 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
LMO4P61968 C1QBPP1-201ENST00000400117 770 ntBASIC13.01□□□□□ -0.33
LMO4P61968 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
LMO4P61968 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC13.01□□□□□ -0.33
LMO4P61968 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC13.01□□□□□ -0.33
LMO4P61968 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC13.01□□□□□ -0.33
LMO4P61968 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC13.01□□□□□ -0.33
LMO4P61968 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms