Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.75■□□□□ 0.11
LIMK1P53667 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
LIMK1P53667 RNF216P1-203ENST00000404404 2427 ntBASIC15.75■□□□□ 0.11
LIMK1P53667 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.75■□□□□ 0.11
LIMK1P53667 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.75■□□□□ 0.11
LIMK1P53667 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
LIMK1P53667 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
LIMK1P53667 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 AC093724.1-201ENST00000448659 1027 ntBASIC15.75■□□□□ 0.11
LIMK1P53667 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.75■□□□□ 0.11
LIMK1P53667 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.75■□□□□ 0.11
LIMK1P53667 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.75■□□□□ 0.11
LIMK1P53667 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC15.75■□□□□ 0.11
LIMK1P53667 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC15.75■□□□□ 0.11
LIMK1P53667 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC15.75■□□□□ 0.11
LIMK1P53667 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 RN7SL560P-201ENST00000577943 264 ntBASIC15.75■□□□□ 0.11
LIMK1P53667 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC15.75■□□□□ 0.11
LIMK1P53667 AL365330.1-201ENST00000607459 531 ntBASIC15.75■□□□□ 0.11
LIMK1P53667 AC091271.1-201ENST00000611877 1162 ntBASIC15.75■□□□□ 0.11
LIMK1P53667 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC15.75■□□□□ 0.11
LIMK1P53667 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.75■□□□□ 0.11
LIMK1P53667 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.75■□□□□ 0.11
LIMK1P53667 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.75■□□□□ 0.11
LIMK1P53667 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
LIMK1P53667 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
LIMK1P53667 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
LIMK1P53667 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LIMK1P53667 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC15.74■□□□□ 0.11
LIMK1P53667 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIMK1P53667 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.74■□□□□ 0.11
LIMK1P53667 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC15.74■□□□□ 0.11
LIMK1P53667 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.74■□□□□ 0.11
LIMK1P53667 AL589702.1-201ENST00000641229 1509 ntBASIC15.74■□□□□ 0.11
LIMK1P53667 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIMK1P53667 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIMK1P53667 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC15.74■□□□□ 0.11
LIMK1P53667 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LIMK1P53667 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
LIMK1P53667 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIMK1P53667 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
LIMK1P53667 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIMK1P53667 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
LIMK1P53667 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.74■□□□□ 0.11
LIMK1P53667 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC15.74■□□□□ 0.11
LIMK1P53667 RPL13AP20-201ENST00000459725 609 ntBASIC15.74■□□□□ 0.11
LIMK1P53667 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC15.74■□□□□ 0.11
LIMK1P53667 AP001889.1-201ENST00000525414 633 ntBASIC15.74■□□□□ 0.11
LIMK1P53667 AC068587.3-201ENST00000526613 355 ntBASIC15.74■□□□□ 0.11
LIMK1P53667 AP001258.2-201ENST00000529891 490 ntBASIC15.74■□□□□ 0.11
LIMK1P53667 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.74■□□□□ 0.11
LIMK1P53667 RIT1-205ENST00000539040 919 ntTSL 2 BASIC15.74■□□□□ 0.11
LIMK1P53667 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.74■□□□□ 0.11
LIMK1P53667 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
LIMK1P53667 AC013467.2-201ENST00000605472 835 ntBASIC15.74■□□□□ 0.11
LIMK1P53667 AC015967.2-201ENST00000624092 234 ntBASIC15.74■□□□□ 0.11
LIMK1P53667 AC006435.4-201ENST00000625037 234 ntBASIC15.74■□□□□ 0.11
LIMK1P53667 AL356737.1-201ENST00000634391 234 ntBASIC15.74■□□□□ 0.11
LIMK1P53667 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIMK1P53667 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.74■□□□□ 0.11
LIMK1P53667 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.74■□□□□ 0.11
LIMK1P53667 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIMK1P53667 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.74■□□□□ 0.11
LIMK1P53667 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LIMK1P53667 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIMK1P53667 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.74■□□□□ 0.11
LIMK1P53667 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIMK1P53667 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIMK1P53667 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIMK1P53667 AC093525.9-201ENST00000624961 1746 ntBASIC15.74■□□□□ 0.11
LIMK1P53667 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
LIMK1P53667 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIMK1P53667 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LIMK1P53667 AL513523.2-202ENST00000427283 2040 ntBASIC15.73■□□□□ 0.11
LIMK1P53667 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.73■□□□□ 0.11
LIMK1P53667 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.73■□□□□ 0.11
LIMK1P53667 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.73■□□□□ 0.11
LIMK1P53667 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LIMK1P53667 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LIMK1P53667 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
LIMK1P53667 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LIMK1P53667 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms