Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RPA3P35244 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RPA3P35244 AC025580.3-201ENST00000617932 1424 ntBASIC16.22■□□□□ 0.19
RPA3P35244 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
RPA3P35244 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RPA3P35244 AC090616.6-203ENST00000579186 1945 ntBASIC16.22■□□□□ 0.19
RPA3P35244 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
RPA3P35244 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RPA3P35244 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.22■□□□□ 0.19
RPA3P35244 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.22■□□□□ 0.19
RPA3P35244 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.22■□□□□ 0.19
RPA3P35244 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
RPA3P35244 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
RPA3P35244 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.22■□□□□ 0.19
RPA3P35244 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RPA3P35244 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.22■□□□□ 0.19
RPA3P35244 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RPA3P35244 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RPA3P35244 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
RPA3P35244 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
RPA3P35244 AC091951.1-201ENST00000512854 2465 ntBASIC16.22■□□□□ 0.19
RPA3P35244 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RPA3P35244 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.22■□□□□ 0.19
RPA3P35244 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RPA3P35244 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RPA3P35244 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
RPA3P35244 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RPA3P35244 AC105250.1-201ENST00000509378 2057 ntBASIC16.22■□□□□ 0.19
RPA3P35244 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RPA3P35244 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
RPA3P35244 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RPA3P35244 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RPA3P35244 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RPA3P35244 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RPA3P35244 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RPA3P35244 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
RPA3P35244 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.21■□□□□ 0.19
RPA3P35244 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
RPA3P35244 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RPA3P35244 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.21■□□□□ 0.19
RPA3P35244 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.21■□□□□ 0.19
RPA3P35244 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RPA3P35244 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RPA3P35244 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.21■□□□□ 0.19
RPA3P35244 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RPA3P35244 HAUS4P1-201ENST00000406739 1145 ntBASIC16.21■□□□□ 0.19
RPA3P35244 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.21■□□□□ 0.19
RPA3P35244 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.21■□□□□ 0.19
RPA3P35244 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
RPA3P35244 KRT19P2-202ENST00000557173 1012 ntBASIC16.21■□□□□ 0.19
RPA3P35244 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.21■□□□□ 0.19
RPA3P35244 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.21■□□□□ 0.19
RPA3P35244 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.21■□□□□ 0.19
RPA3P35244 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.21■□□□□ 0.19
RPA3P35244 AC063926.3-201ENST00000624734 5658 ntBASIC16.21■□□□□ 0.19
RPA3P35244 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RPA3P35244 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RPA3P35244 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RPA3P35244 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RPA3P35244 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RPA3P35244 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
RPA3P35244 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RPA3P35244 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RPA3P35244 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
RPA3P35244 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
RPA3P35244 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC16.21■□□□□ 0.18
RPA3P35244 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
RPA3P35244 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
RPA3P35244 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.21■□□□□ 0.18
RPA3P35244 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
RPA3P35244 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RPA3P35244 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RPA3P35244 PMS2P7-201ENST00000506558 1336 ntBASIC16.2■□□□□ 0.18
RPA3P35244 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RPA3P35244 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
RPA3P35244 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RPA3P35244 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.2■□□□□ 0.18
RPA3P35244 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RPA3P35244 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
RPA3P35244 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.2■□□□□ 0.18
RPA3P35244 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
RPA3P35244 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
RPA3P35244 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RPA3P35244 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.2■□□□□ 0.18
RPA3P35244 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RPA3P35244 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
RPA3P35244 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RPA3P35244 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RPA3P35244 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RPA3P35244 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.2■□□□□ 0.18
RPA3P35244 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.2■□□□□ 0.18
RPA3P35244 AC023274.1-201ENST00000418278 595 ntBASIC16.2■□□□□ 0.18
RPA3P35244 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.2■□□□□ 0.18
RPA3P35244 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.2■□□□□ 0.18
RPA3P35244 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.2■□□□□ 0.18
RPA3P35244 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.2■□□□□ 0.18
RPA3P35244 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.2■□□□□ 0.18
RPA3P35244 AC040169.1-201ENST00000565382 521 ntBASIC16.2■□□□□ 0.18
RPA3P35244 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.2■□□□□ 0.18
RPA3P35244 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms