Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
SHMT2P34897 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.71■□□□□ 0.1
SHMT2P34897 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.71■□□□□ 0.1
SHMT2P34897 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.7■□□□□ 0.1
SHMT2P34897 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 AC006449.6-201ENST00000612330 2296 ntBASIC15.7■□□□□ 0.1
SHMT2P34897 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.7■□□□□ 0.1
SHMT2P34897 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.7■□□□□ 0.1
SHMT2P34897 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.7■□□□□ 0.1
SHMT2P34897 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.7■□□□□ 0.1
SHMT2P34897 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.7■□□□□ 0.1
SHMT2P34897 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.7■□□□□ 0.1
SHMT2P34897 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.7■□□□□ 0.1
SHMT2P34897 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHMT2P34897 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHMT2P34897 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHMT2P34897 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHMT2P34897 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.69■□□□□ 0.1
SHMT2P34897 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
SHMT2P34897 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.69■□□□□ 0.1
SHMT2P34897 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SHMT2P34897 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHMT2P34897 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHMT2P34897 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
SHMT2P34897 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHMT2P34897 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.69■□□□□ 0.1
SHMT2P34897 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHMT2P34897 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.69■□□□□ 0.1
SHMT2P34897 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHMT2P34897 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SHMT2P34897 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
SHMT2P34897 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHMT2P34897 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHMT2P34897 AL139010.1-201ENST00000454878 894 ntBASIC15.69■□□□□ 0.1
SHMT2P34897 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.69■□□□□ 0.1
SHMT2P34897 AL158211.3-201ENST00000607385 239 ntBASIC15.69■□□□□ 0.1
SHMT2P34897 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
SHMT2P34897 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.69■□□□□ 0.1
SHMT2P34897 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SHMT2P34897 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHMT2P34897 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHMT2P34897 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHMT2P34897 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15.68■□□□□ 0.1
SHMT2P34897 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.68■□□□□ 0.1
SHMT2P34897 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.68■□□□□ 0.1
SHMT2P34897 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
SHMT2P34897 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.68■□□□□ 0.1
SHMT2P34897 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.68■□□□□ 0.1
SHMT2P34897 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.68■□□□□ 0.1
SHMT2P34897 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
SHMT2P34897 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.68■□□□□ 0.1
SHMT2P34897 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.68■□□□□ 0.1
SHMT2P34897 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.68■□□□□ 0.1
SHMT2P34897 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.68■□□□□ 0.1
SHMT2P34897 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.68■□□□□ 0.1
SHMT2P34897 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 MIR943-201ENST00000401286 94 ntBASIC15.68■□□□□ 0.1
SHMT2P34897 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.68■□□□□ 0.1
SHMT2P34897 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.68■□□□□ 0.1
SHMT2P34897 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 MTND6P24-201ENST00000440466 518 ntBASIC15.68■□□□□ 0.1
SHMT2P34897 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.68■□□□□ 0.1
SHMT2P34897 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms