Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.96■□□□□ 0.15
MSH3P20585 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.96■□□□□ 0.15
MSH3P20585 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.96■□□□□ 0.15
MSH3P20585 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.96■□□□□ 0.15
MSH3P20585 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.96■□□□□ 0.15
MSH3P20585 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
MSH3P20585 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
MSH3P20585 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.96■□□□□ 0.15
MSH3P20585 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 TSPY26P-202ENST00000565928 3884 ntBASIC15.96■□□□□ 0.15
MSH3P20585 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
MSH3P20585 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.96■□□□□ 0.14
MSH3P20585 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
MSH3P20585 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
MSH3P20585 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
MSH3P20585 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
MSH3P20585 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
MSH3P20585 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.95■□□□□ 0.14
MSH3P20585 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
MSH3P20585 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15.95■□□□□ 0.14
MSH3P20585 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
MSH3P20585 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.95■□□□□ 0.14
MSH3P20585 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
MSH3P20585 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.95■□□□□ 0.14
MSH3P20585 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.95■□□□□ 0.14
MSH3P20585 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.95■□□□□ 0.14
MSH3P20585 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.95■□□□□ 0.14
MSH3P20585 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.95■□□□□ 0.14
MSH3P20585 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.95■□□□□ 0.14
MSH3P20585 AC015911.4-201ENST00000588022 1070 ntBASIC15.95■□□□□ 0.14
MSH3P20585 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.95■□□□□ 0.14
MSH3P20585 RN7SL828P-201ENST00000607615 303 ntBASIC15.95■□□□□ 0.14
MSH3P20585 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
MSH3P20585 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
MSH3P20585 AP001282.1-201ENST00000531301 1499 ntBASIC15.95■□□□□ 0.14
MSH3P20585 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.95■□□□□ 0.14
MSH3P20585 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.95■□□□□ 0.14
MSH3P20585 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.95■□□□□ 0.14
MSH3P20585 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
MSH3P20585 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSH3P20585 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
MSH3P20585 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.94■□□□□ 0.14
MSH3P20585 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 AC132872.4-202ENST00000622924 2756 ntBASIC15.94■□□□□ 0.14
MSH3P20585 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.94■□□□□ 0.14
MSH3P20585 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.94■□□□□ 0.14
MSH3P20585 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.94■□□□□ 0.14
MSH3P20585 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.94■□□□□ 0.14
MSH3P20585 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
MSH3P20585 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms