Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 AL139010.1-201ENST00000454878 894 ntBASIC16.8■□□□□ 0.28
APOEP02649 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.8■□□□□ 0.28
APOEP02649 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.8■□□□□ 0.28
APOEP02649 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.8■□□□□ 0.28
APOEP02649 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.8■□□□□ 0.28
APOEP02649 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.8■□□□□ 0.28
APOEP02649 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.8■□□□□ 0.28
APOEP02649 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
APOEP02649 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
APOEP02649 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
APOEP02649 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
APOEP02649 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.8■□□□□ 0.28
APOEP02649 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.8■□□□□ 0.28
APOEP02649 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
APOEP02649 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.79■□□□□ 0.28
APOEP02649 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.79■□□□□ 0.28
APOEP02649 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.79■□□□□ 0.28
APOEP02649 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.79■□□□□ 0.28
APOEP02649 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
APOEP02649 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.79■□□□□ 0.28
APOEP02649 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.79■□□□□ 0.28
APOEP02649 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.79■□□□□ 0.28
APOEP02649 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.79■□□□□ 0.28
APOEP02649 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
APOEP02649 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.79■□□□□ 0.28
APOEP02649 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
APOEP02649 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.79■□□□□ 0.28
APOEP02649 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 IGHV3-42-201ENST00000520410 361 ntBASIC16.79■□□□□ 0.28
APOEP02649 DUX4L27-201ENST00000554796 1261 ntBASIC16.79■□□□□ 0.28
APOEP02649 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.79■□□□□ 0.28
APOEP02649 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
APOEP02649 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.79■□□□□ 0.28
APOEP02649 RN7SL828P-201ENST00000607615 303 ntBASIC16.79■□□□□ 0.28
APOEP02649 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.79■□□□□ 0.28
APOEP02649 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.79■□□□□ 0.28
APOEP02649 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOEP02649 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
APOEP02649 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
APOEP02649 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.79■□□□□ 0.28
APOEP02649 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.78■□□□□ 0.28
APOEP02649 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
APOEP02649 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.78■□□□□ 0.28
APOEP02649 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
APOEP02649 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.78■□□□□ 0.28
APOEP02649 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.78■□□□□ 0.28
APOEP02649 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.78■□□□□ 0.28
APOEP02649 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
APOEP02649 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
APOEP02649 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
APOEP02649 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.78■□□□□ 0.28
APOEP02649 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
APOEP02649 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
APOEP02649 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
APOEP02649 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
APOEP02649 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.78■□□□□ 0.28
APOEP02649 AL158211.3-201ENST00000607385 239 ntBASIC16.78■□□□□ 0.28
APOEP02649 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
APOEP02649 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.78■□□□□ 0.28
APOEP02649 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
APOEP02649 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
APOEP02649 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
APOEP02649 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
APOEP02649 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.78■□□□□ 0.28
APOEP02649 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms