Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.04■□□□□ 0.16
SHOX2O60902 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC16.04■□□□□ 0.16
SHOX2O60902 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC16.04■□□□□ 0.16
SHOX2O60902 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
SHOX2O60902 AC113367.3-201ENST00000508316 1912 ntBASIC16.04■□□□□ 0.16
SHOX2O60902 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SHOX2O60902 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SHOX2O60902 AP001282.1-201ENST00000531301 1499 ntBASIC16.03■□□□□ 0.16
SHOX2O60902 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC16.03■□□□□ 0.16
SHOX2O60902 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.03■□□□□ 0.16
SHOX2O60902 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.03■□□□□ 0.16
SHOX2O60902 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
SHOX2O60902 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
SHOX2O60902 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
SHOX2O60902 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC16.03■□□□□ 0.16
SHOX2O60902 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC16.03■□□□□ 0.16
SHOX2O60902 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.03■□□□□ 0.16
SHOX2O60902 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.03■□□□□ 0.16
SHOX2O60902 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.03■□□□□ 0.16
SHOX2O60902 AC087641.1-201ENST00000557561 1021 ntBASIC16.03■□□□□ 0.16
SHOX2O60902 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.03■□□□□ 0.16
SHOX2O60902 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.03■□□□□ 0.16
SHOX2O60902 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.03■□□□□ 0.16
SHOX2O60902 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.03■□□□□ 0.16
SHOX2O60902 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SHOX2O60902 AC124864.1-201ENST00000623408 392 ntBASIC16.03■□□□□ 0.16
SHOX2O60902 AC073592.4-201ENST00000623827 446 ntBASIC16.03■□□□□ 0.16
SHOX2O60902 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
SHOX2O60902 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
SHOX2O60902 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC16.03■□□□□ 0.16
SHOX2O60902 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
SHOX2O60902 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SHOX2O60902 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHOX2O60902 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHOX2O60902 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.02■□□□□ 0.16
SHOX2O60902 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHOX2O60902 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SHOX2O60902 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SHOX2O60902 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHOX2O60902 AC063926.3-201ENST00000624734 5658 ntBASIC16.02■□□□□ 0.16
SHOX2O60902 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC16.02■□□□□ 0.16
SHOX2O60902 ACE3P-201ENST00000423435 1973 ntBASIC16.02■□□□□ 0.16
SHOX2O60902 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.02■□□□□ 0.16
SHOX2O60902 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHOX2O60902 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHOX2O60902 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHOX2O60902 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC16.02■□□□□ 0.16
SHOX2O60902 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SHOX2O60902 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
SHOX2O60902 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.02■□□□□ 0.16
SHOX2O60902 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.02■□□□□ 0.16
SHOX2O60902 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.02■□□□□ 0.16
SHOX2O60902 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.02■□□□□ 0.16
SHOX2O60902 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.02■□□□□ 0.16
SHOX2O60902 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.02■□□□□ 0.16
SHOX2O60902 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.02■□□□□ 0.16
SHOX2O60902 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.02■□□□□ 0.16
SHOX2O60902 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.02■□□□□ 0.16
SHOX2O60902 AC104076.2-201ENST00000448912 469 ntBASIC16.02■□□□□ 0.16
SHOX2O60902 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.02■□□□□ 0.16
SHOX2O60902 AC011840.4-201ENST00000578471 627 ntBASIC16.02■□□□□ 0.16
SHOX2O60902 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.02■□□□□ 0.16
SHOX2O60902 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.02■□□□□ 0.16
SHOX2O60902 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
SHOX2O60902 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.02■□□□□ 0.16
SHOX2O60902 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHOX2O60902 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHOX2O60902 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.02■□□□□ 0.15
SHOX2O60902 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHOX2O60902 AP001267.2-201ENST00000532619 2086 ntBASIC16.02■□□□□ 0.15
SHOX2O60902 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHOX2O60902 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms