Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.61■□□□□ 0.09
HDAC3O15379 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.61■□□□□ 0.09
HDAC3O15379 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.61■□□□□ 0.09
HDAC3O15379 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.61■□□□□ 0.09
HDAC3O15379 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.61■□□□□ 0.09
HDAC3O15379 MIR4751-201ENST00000578027 74 ntBASIC15.61■□□□□ 0.09
HDAC3O15379 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
HDAC3O15379 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.61■□□□□ 0.09
HDAC3O15379 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC3O15379 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
HDAC3O15379 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.61■□□□□ 0.09
HDAC3O15379 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.61■□□□□ 0.09
HDAC3O15379 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.61■□□□□ 0.09
HDAC3O15379 CICP23-201ENST00000605013 2741 ntBASIC15.61■□□□□ 0.09
HDAC3O15379 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC3O15379 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC3O15379 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC3O15379 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC3O15379 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC3O15379 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC3O15379 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
HDAC3O15379 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC3O15379 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.61■□□□□ 0.09
HDAC3O15379 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HDAC3O15379 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.6■□□□□ 0.09
HDAC3O15379 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.6■□□□□ 0.09
HDAC3O15379 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.6■□□□□ 0.09
HDAC3O15379 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.6■□□□□ 0.09
HDAC3O15379 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
HDAC3O15379 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.6■□□□□ 0.09
HDAC3O15379 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
HDAC3O15379 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
HDAC3O15379 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 RPS2P28-201ENST00000314255 741 ntBASIC15.6■□□□□ 0.09
HDAC3O15379 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.6■□□□□ 0.09
HDAC3O15379 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.6■□□□□ 0.09
HDAC3O15379 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.6■□□□□ 0.09
HDAC3O15379 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC15.6■□□□□ 0.09
HDAC3O15379 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC15.6■□□□□ 0.09
HDAC3O15379 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC15.6■□□□□ 0.09
HDAC3O15379 AC117500.6-201ENST00000624871 588 ntBASIC15.6■□□□□ 0.09
HDAC3O15379 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.6■□□□□ 0.09
HDAC3O15379 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.6■□□□□ 0.09
HDAC3O15379 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.6■□□□□ 0.09
HDAC3O15379 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 PMS2P7-201ENST00000506558 1336 ntBASIC15.6■□□□□ 0.09
HDAC3O15379 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.6■□□□□ 0.09
HDAC3O15379 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.6■□□□□ 0.09
HDAC3O15379 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
HDAC3O15379 KRT8P44-201ENST00000441609 1350 ntBASIC15.6■□□□□ 0.09
HDAC3O15379 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HDAC3O15379 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.59■□□□□ 0.09
HDAC3O15379 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
HDAC3O15379 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
HDAC3O15379 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HDAC3O15379 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
HDAC3O15379 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.59■□□□□ 0.09
HDAC3O15379 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.59■□□□□ 0.09
HDAC3O15379 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HDAC3O15379 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HDAC3O15379 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.59■□□□□ 0.09
HDAC3O15379 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HDAC3O15379 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
HDAC3O15379 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
HDAC3O15379 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HDAC3O15379 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
HDAC3O15379 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.59■□□□□ 0.09
HDAC3O15379 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.59■□□□□ 0.09
HDAC3O15379 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
HDAC3O15379 AL445228.2-201ENST00000605589 952 ntBASIC15.59■□□□□ 0.09
HDAC3O15379 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC15.59■□□□□ 0.09
HDAC3O15379 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.59■□□□□ 0.09
HDAC3O15379 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HDAC3O15379 AGAP7P-201ENST00000582299 2062 ntBASIC15.59■□□□□ 0.09
HDAC3O15379 AGAP14-201ENST00000624701 2060 ntBASIC15.59■□□□□ 0.09
HDAC3O15379 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms