Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HIF3AQ9Y2N7 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HIF3AQ9Y2N7 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.49□□□□□ -0.09
HIF3AQ9Y2N7 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HIF3AQ9Y2N7 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
HIF3AQ9Y2N7 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HIF3AQ9Y2N7 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HIF3AQ9Y2N7 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.49□□□□□ -0.09
HIF3AQ9Y2N7 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
HIF3AQ9Y2N7 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.49□□□□□ -0.09
HIF3AQ9Y2N7 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HIF3AQ9Y2N7 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
HIF3AQ9Y2N7 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.49□□□□□ -0.09
HIF3AQ9Y2N7 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.49□□□□□ -0.09
HIF3AQ9Y2N7 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 AC020658.6-201ENST00000623564 1870 ntBASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 FAM220BP-201ENST00000377689 816 ntBASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 CBR1-202ENST00000399191 838 ntTSL 3 BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 PP14571-201ENST00000404327 934 ntTSL 2 BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 AC023274.1-201ENST00000418278 595 ntBASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 AC026396.1-201ENST00000419388 421 ntBASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 MCCD1P2-201ENST00000423228 335 ntBASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 NMU-202ENST00000505262 693 ntTSL 3 BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 CITED2-204ENST00000618718 901 ntTSL 2 BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 AL691432.1-201ENST00000596308 1422 ntBASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HIF3AQ9Y2N7 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 AP003680.1-201ENST00000598970 3660 ntBASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 AC243562.1-201ENST00000560672 389 ntBASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms