Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC005695.3-201ENST00000614522 232 ntBASIC30.08■■■□□ 2.41
SHROOM4Q9ULL8 PCDH8P1-201ENST00000428983 2773 ntBASIC30.08■■■□□ 2.41
SHROOM4Q9ULL8 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC30.08■■■□□ 2.41
SHROOM4Q9ULL8 NKILA-202ENST00000614771 2598 ntBASIC30.08■■■□□ 2.41
SHROOM4Q9ULL8 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
SHROOM4Q9ULL8 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC30.08■■■□□ 2.41
SHROOM4Q9ULL8 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
SHROOM4Q9ULL8 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
SHROOM4Q9ULL8 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
SHROOM4Q9ULL8 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC30.08■■■□□ 2.41
SHROOM4Q9ULL8 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 AC079328.1-201ENST00000560358 952 ntBASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 AL359711.2-201ENST00000563105 872 ntBASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 PRKN-211ENST00000615065 261 ntTSL 5 BASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 KRT8P19-201ENST00000551916 1455 ntBASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 AC138028.6-201ENST00000616106 1482 ntBASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
SHROOM4Q9ULL8 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 GRN-222ENST00000639447 1314 ntTSL 2 BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 AP001258.2-201ENST00000529891 490 ntBASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 AL022328.3-201ENST00000607943 679 ntBASIC30.06■■■□□ 2.4
SHROOM4Q9ULL8 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SHROOM4Q9ULL8 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC30.05■■■□□ 2.4
SHROOM4Q9ULL8 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
SHROOM4Q9ULL8 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SHROOM4Q9ULL8 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
SHROOM4Q9ULL8 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC30.05■■■□□ 2.4
SHROOM4Q9ULL8 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
SHROOM4Q9ULL8 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SHROOM4Q9ULL8 AC004987.2-201ENST00000395959 1148 ntBASIC30.05■■■□□ 2.4
SHROOM4Q9ULL8 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC30.05■■■□□ 2.4
SHROOM4Q9ULL8 AC245100.5-201ENST00000452108 331 ntBASIC30.05■■■□□ 2.4
SHROOM4Q9ULL8 MIR4722-201ENST00000578292 60 ntBASIC30.05■■■□□ 2.4
SHROOM4Q9ULL8 AL118558.3-201ENST00000607414 1079 ntBASIC30.05■■■□□ 2.4
SHROOM4Q9ULL8 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SHROOM4Q9ULL8 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SHROOM4Q9ULL8 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
SHROOM4Q9ULL8 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
SHROOM4Q9ULL8 PGR-209ENST00000617858 2816 ntTSL 5 BASIC30.04■■■□□ 2.4
SHROOM4Q9ULL8 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC30.04■■■□□ 2.4
SHROOM4Q9ULL8 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
SHROOM4Q9ULL8 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC30.04■■■□□ 2.4
SHROOM4Q9ULL8 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC30.04■■■□□ 2.4
SHROOM4Q9ULL8 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC30.04■■■□□ 2.4
SHROOM4Q9ULL8 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
SHROOM4Q9ULL8 AC253536.4-201ENST00000440539 267 ntBASIC30.04■■■□□ 2.4
SHROOM4Q9ULL8 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC30.04■■■□□ 2.4
SHROOM4Q9ULL8 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC30.04■■■□□ 2.4
SHROOM4Q9ULL8 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC30.04■■■□□ 2.4
SHROOM4Q9ULL8 AC091271.1-201ENST00000611877 1162 ntBASIC30.04■■■□□ 2.4
SHROOM4Q9ULL8 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC30.04■■■□□ 2.4
SHROOM4Q9ULL8 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 AC018892.3-201ENST00000623986 2499 ntBASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 PKIG-203ENST00000372887 769 ntTSL 3 BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 NUS1P3-201ENST00000423502 862 ntBASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 ACTG1P17-201ENST00000558391 1119 ntBASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 AC009486.1-201ENST00000569860 813 ntBASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms