Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SYNE4Q8N205 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
SYNE4Q8N205 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SYNE4Q8N205 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SYNE4Q8N205 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC19.74■□□□□ 0.75
SYNE4Q8N205 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SYNE4Q8N205 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
SYNE4Q8N205 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC19.74■□□□□ 0.75
SYNE4Q8N205 TUBB1P2-201ENST00000422712 1306 ntBASIC19.74■□□□□ 0.75
SYNE4Q8N205 TUBB1P1-201ENST00000503144 1300 ntBASIC19.74■□□□□ 0.75
SYNE4Q8N205 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC19.74■□□□□ 0.75
SYNE4Q8N205 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SYNE4Q8N205 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
SYNE4Q8N205 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.73■□□□□ 0.75
SYNE4Q8N205 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SYNE4Q8N205 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SYNE4Q8N205 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SYNE4Q8N205 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SYNE4Q8N205 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SYNE4Q8N205 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SYNE4Q8N205 AC020907.1-201ENST00000616460 1350 ntBASIC19.73■□□□□ 0.75
SYNE4Q8N205 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
SYNE4Q8N205 TP73-209ENST00000603362 1668 ntTSL 5 BASIC19.73■□□□□ 0.75
SYNE4Q8N205 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SYNE4Q8N205 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
SYNE4Q8N205 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SYNE4Q8N205 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SYNE4Q8N205 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SYNE4Q8N205 RPL28-203ENST00000428193 573 ntTSL 2 BASIC19.73■□□□□ 0.75
SYNE4Q8N205 AL355994.2-201ENST00000447882 704 ntBASIC19.73■□□□□ 0.75
SYNE4Q8N205 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
SYNE4Q8N205 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SYNE4Q8N205 RPL28-207ENST00000558815 616 ntTSL 2 BASIC19.73■□□□□ 0.75
SYNE4Q8N205 APRT-204ENST00000563655 709 ntTSL 5 BASIC19.73■□□□□ 0.75
SYNE4Q8N205 AC120045.2-201ENST00000567334 178 ntBASIC19.73■□□□□ 0.75
SYNE4Q8N205 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC19.73■□□□□ 0.75
SYNE4Q8N205 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC19.73■□□□□ 0.75
SYNE4Q8N205 AC005252.2-201ENST00000624630 1141 ntBASIC19.73■□□□□ 0.75
SYNE4Q8N205 AC068587.10-201ENST00000641210 219 ntBASIC19.73■□□□□ 0.75
SYNE4Q8N205 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SYNE4Q8N205 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC19.73■□□□□ 0.75
SYNE4Q8N205 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SYNE4Q8N205 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SYNE4Q8N205 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC19.73■□□□□ 0.75
SYNE4Q8N205 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC19.73■□□□□ 0.75
SYNE4Q8N205 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SYNE4Q8N205 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
SYNE4Q8N205 TP73-213ENST00000604479 1623 ntTSL 5 BASIC19.73■□□□□ 0.75
SYNE4Q8N205 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE4Q8N205 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE4Q8N205 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE4Q8N205 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE4Q8N205 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE4Q8N205 USB1-202ENST00000423271 1217 ntTSL 2 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE4Q8N205 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE4Q8N205 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE4Q8N205 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE4Q8N205 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE4Q8N205 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SYNE4Q8N205 AL121723.1-201ENST00000445194 1519 ntBASIC19.71■□□□□ 0.75
SYNE4Q8N205 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE4Q8N205 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE4Q8N205 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE4Q8N205 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE4Q8N205 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE4Q8N205 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE4Q8N205 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE4Q8N205 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE4Q8N205 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE4Q8N205 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 RNA5SP412-201ENST00000516234 123 ntBASIC19.71■□□□□ 0.75
SYNE4Q8N205 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 AL022328.1-201ENST00000610050 478 ntBASIC19.71■□□□□ 0.75
SYNE4Q8N205 AC244093.1-201ENST00000610837 814 ntBASIC19.71■□□□□ 0.75
SYNE4Q8N205 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms