Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
NUP54Q7Z3B4 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NUP54Q7Z3B4 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NUP54Q7Z3B4 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NUP54Q7Z3B4 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NUP54Q7Z3B4 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NUP54Q7Z3B4 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.85□□□□□ -0.03
NUP54Q7Z3B4 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NUP54Q7Z3B4 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
NUP54Q7Z3B4 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
NUP54Q7Z3B4 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.85□□□□□ -0.03
NUP54Q7Z3B4 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.85□□□□□ -0.03
NUP54Q7Z3B4 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 PCDHA1-201ENST00000378133 2726 ntBASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 MTND6P24-201ENST00000440466 518 ntBASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 AC069120.2-201ENST00000524091 540 ntBASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 RFPL4AP1-201ENST00000530883 850 ntBASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 AC243562.2-201ENST00000561247 970 ntBASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 AC106028.4-201ENST00000614509 607 ntBASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUP54Q7Z3B4 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
NUP54Q7Z3B4 AL691432.1-201ENST00000596308 1422 ntBASIC14.83□□□□□ -0.03
NUP54Q7Z3B4 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
NUP54Q7Z3B4 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
NUP54Q7Z3B4 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
NUP54Q7Z3B4 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.83□□□□□ -0.03
NUP54Q7Z3B4 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
NUP54Q7Z3B4 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
NUP54Q7Z3B4 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
NUP54Q7Z3B4 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
NUP54Q7Z3B4 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
NUP54Q7Z3B4 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.83□□□□□ -0.03
NUP54Q7Z3B4 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 BANF1P1-201ENST00000553684 263 ntBASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms