Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 MIR1909-201ENST00000411312 80 ntBASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 AC007389.4-201ENST00000454674 793 ntBASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 AC090142.2-201ENST00000483263 416 ntBASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 AC036164.1-201ENST00000570544 333 ntBASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 AC017083.2-201ENST00000608069 979 ntBASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNFT1Q5M7Z0 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 AL662844.4-201ENST00000606367 2838 ntBASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 AC018892.3-201ENST00000623986 2499 ntBASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 HNRNPUP1-201ENST00000554987 333 ntBASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 AC008735.3-201ENST00000596646 500 ntBASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 AL450472.2-201ENST00000603663 1156 ntBASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 AL512343.1-201ENST00000605837 169 ntBASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNFT1Q5M7Z0 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
RNFT1Q5M7Z0 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
RNFT1Q5M7Z0 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.33□□□□□ -0.11
RNFT1Q5M7Z0 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
RNFT1Q5M7Z0 PGR-209ENST00000617858 2816 ntTSL 5 BASIC14.33□□□□□ -0.11
RNFT1Q5M7Z0 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
RNFT1Q5M7Z0 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
RNFT1Q5M7Z0 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
RNFT1Q5M7Z0 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
RNFT1Q5M7Z0 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
RNFT1Q5M7Z0 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
RNFT1Q5M7Z0 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms