Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.83□□□□□ -0.04
RNF4P78317 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
RNF4P78317 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
RNF4P78317 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
RNF4P78317 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.83□□□□□ -0.04
RNF4P78317 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.83□□□□□ -0.04
RNF4P78317 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.83□□□□□ -0.04
RNF4P78317 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.83□□□□□ -0.04
RNF4P78317 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
RNF4P78317 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.83□□□□□ -0.04
RNF4P78317 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.83□□□□□ -0.04
RNF4P78317 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.83□□□□□ -0.04
RNF4P78317 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.83□□□□□ -0.04
RNF4P78317 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.83□□□□□ -0.04
RNF4P78317 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.83□□□□□ -0.04
RNF4P78317 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
RNF4P78317 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.83□□□□□ -0.04
RNF4P78317 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.83□□□□□ -0.04
RNF4P78317 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
RNF4P78317 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
RNF4P78317 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC14.83□□□□□ -0.04
RNF4P78317 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RNF4P78317 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RNF4P78317 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.83□□□□□ -0.04
RNF4P78317 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC14.83□□□□□ -0.04
RNF4P78317 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.83□□□□□ -0.04
RNF4P78317 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
RNF4P78317 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RNF4P78317 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.82□□□□□ -0.04
RNF4P78317 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
RNF4P78317 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.82□□□□□ -0.04
RNF4P78317 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC14.82□□□□□ -0.04
RNF4P78317 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
RNF4P78317 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
RNF4P78317 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
RNF4P78317 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.82□□□□□ -0.04
RNF4P78317 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.82□□□□□ -0.04
RNF4P78317 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 MRPS18AP1-201ENST00000414458 589 ntBASIC14.82□□□□□ -0.04
RNF4P78317 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.82□□□□□ -0.04
RNF4P78317 FAM8A3P-201ENST00000427218 844 ntBASIC14.82□□□□□ -0.04
RNF4P78317 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 HIST3H2BA-201ENST00000436555 524 ntBASIC14.82□□□□□ -0.04
RNF4P78317 UGT1A2P-201ENST00000454886 866 ntBASIC14.82□□□□□ -0.04
RNF4P78317 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.82□□□□□ -0.04
RNF4P78317 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.82□□□□□ -0.04
RNF4P78317 ZNF890P-202ENST00000530367 1156 ntBASIC14.82□□□□□ -0.04
RNF4P78317 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 AC092364.2-202ENST00000597012 1073 ntBASIC14.82□□□□□ -0.04
RNF4P78317 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC14.82□□□□□ -0.04
RNF4P78317 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC14.82□□□□□ -0.04
RNF4P78317 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC14.82□□□□□ -0.04
RNF4P78317 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.82□□□□□ -0.04
RNF4P78317 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
RNF4P78317 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.82□□□□□ -0.04
RNF4P78317 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
RNF4P78317 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.82□□□□□ -0.04
RNF4P78317 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RNF4P78317 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
RNF4P78317 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 CICP6-201ENST00000457191 2729 ntBASIC14.81□□□□□ -0.04
RNF4P78317 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
RNF4P78317 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.81□□□□□ -0.04
RNF4P78317 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
RNF4P78317 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
RNF4P78317 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.81□□□□□ -0.04
RNF4P78317 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.81□□□□□ -0.04
RNF4P78317 TSPY16P-201ENST00000449843 468 ntBASIC14.81□□□□□ -0.04
RNF4P78317 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.81□□□□□ -0.04
RNF4P78317 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RNF4P78317 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
RNF4P78317 AC009407.1-201ENST00000568958 598 ntBASIC14.81□□□□□ -0.04
RNF4P78317 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms