Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CIITAP33076 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CIITAP33076 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CIITAP33076 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CIITAP33076 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CIITAP33076 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CIITAP33076 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CIITAP33076 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CIITAP33076 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CIITAP33076 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CIITAP33076 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC17.94■□□□□ 0.46
CIITAP33076 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CIITAP33076 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CIITAP33076 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CIITAP33076 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CIITAP33076 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CIITAP33076 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17.94■□□□□ 0.46
CIITAP33076 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.94■□□□□ 0.46
CIITAP33076 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.94■□□□□ 0.46
CIITAP33076 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.94■□□□□ 0.46
CIITAP33076 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CIITAP33076 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC17.94■□□□□ 0.46
CIITAP33076 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.94■□□□□ 0.46
CIITAP33076 AL391069.4-201ENST00000609583 481 ntBASIC17.94■□□□□ 0.46
CIITAP33076 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC17.94■□□□□ 0.46
CIITAP33076 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CIITAP33076 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
CIITAP33076 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
CIITAP33076 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17.94■□□□□ 0.46
CIITAP33076 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
CIITAP33076 AC018695.7-201ENST00000624587 2492 ntBASIC17.94■□□□□ 0.46
CIITAP33076 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CIITAP33076 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.94■□□□□ 0.46
CIITAP33076 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CIITAP33076 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CIITAP33076 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CIITAP33076 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CIITAP33076 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.94■□□□□ 0.46
CIITAP33076 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CIITAP33076 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CIITAP33076 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
CIITAP33076 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CIITAP33076 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CIITAP33076 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CIITAP33076 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CIITAP33076 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.93■□□□□ 0.46
CIITAP33076 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.93■□□□□ 0.46
CIITAP33076 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CIITAP33076 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.93■□□□□ 0.46
CIITAP33076 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC17.93■□□□□ 0.46
CIITAP33076 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CIITAP33076 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CIITAP33076 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CIITAP33076 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CIITAP33076 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CIITAP33076 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CIITAP33076 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CIITAP33076 AC015922.1-201ENST00000421102 1152 ntBASIC17.93■□□□□ 0.46
CIITAP33076 KRT18P64-201ENST00000434946 1219 ntBASIC17.93■□□□□ 0.46
CIITAP33076 GNAQP1-201ENST00000444815 1067 ntBASIC17.93■□□□□ 0.46
CIITAP33076 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC17.93■□□□□ 0.46
CIITAP33076 MEIS3P1-201ENST00000495167 958 ntBASIC17.93■□□□□ 0.46
CIITAP33076 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.93■□□□□ 0.46
CIITAP33076 SLED1-202ENST00000512051 380 ntBASIC17.93■□□□□ 0.46
CIITAP33076 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC17.93■□□□□ 0.46
CIITAP33076 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC17.93■□□□□ 0.46
CIITAP33076 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.93■□□□□ 0.46
CIITAP33076 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.93■□□□□ 0.46
CIITAP33076 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CIITAP33076 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CIITAP33076 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CIITAP33076 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.93■□□□□ 0.46
CIITAP33076 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CIITAP33076 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CIITAP33076 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CIITAP33076 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
CIITAP33076 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.92■□□□□ 0.46
CIITAP33076 CROCCP1-201ENST00000426910 5675 ntBASIC17.92■□□□□ 0.46
CIITAP33076 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC17.92■□□□□ 0.46
CIITAP33076 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 SPDYE19P-201ENST00000338590 713 ntBASIC17.92■□□□□ 0.46
CIITAP33076 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.92■□□□□ 0.46
CIITAP33076 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CIITAP33076 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
CIITAP33076 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CIITAP33076 PIN1P1-201ENST00000412108 996 ntBASIC17.92■□□□□ 0.46
CIITAP33076 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 AC093004.1-201ENST00000508850 424 ntBASIC17.92■□□□□ 0.46
CIITAP33076 TIMM17BP1-201ENST00000545713 516 ntBASIC17.92■□□□□ 0.46
CIITAP33076 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC17.92■□□□□ 0.46
CIITAP33076 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms