Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC20.49■□□□□ 0.87
RXRBP28702 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
RXRBP28702 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RXRBP28702 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
RXRBP28702 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RXRBP28702 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RXRBP28702 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RXRBP28702 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RXRBP28702 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
RXRBP28702 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RXRBP28702 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RXRBP28702 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RXRBP28702 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
RXRBP28702 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RXRBP28702 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RXRBP28702 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC20.48■□□□□ 0.87
RXRBP28702 AL357373.1-201ENST00000394974 322 ntBASIC20.48■□□□□ 0.87
RXRBP28702 POM121L8P-201ENST00000417732 1281 ntBASIC20.48■□□□□ 0.87
RXRBP28702 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RXRBP28702 POM121L9P-203ENST00000441984 1285 ntBASIC20.48■□□□□ 0.87
RXRBP28702 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RXRBP28702 AC245100.5-201ENST00000452108 331 ntBASIC20.48■□□□□ 0.87
RXRBP28702 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC20.48■□□□□ 0.87
RXRBP28702 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC20.48■□□□□ 0.87
RXRBP28702 AC130709.1-201ENST00000484779 1212 ntBASIC20.48■□□□□ 0.87
RXRBP28702 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC20.48■□□□□ 0.87
RXRBP28702 AL160314.3-201ENST00000556041 767 ntBASIC20.48■□□□□ 0.87
RXRBP28702 TPM1-223ENST00000560445 485 ntTSL 3 BASIC20.48■□□□□ 0.87
RXRBP28702 AC005324.6-201ENST00000587972 613 ntBASIC20.48■□□□□ 0.87
RXRBP28702 HKR1-225ENST00000592168 566 ntTSL 4 BASIC20.48■□□□□ 0.87
RXRBP28702 MME-218ENST00000625667 363 ntTSL 5 BASIC20.48■□□□□ 0.87
RXRBP28702 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RXRBP28702 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RXRBP28702 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
RXRBP28702 AC092068.3-201ENST00000587894 2016 ntBASIC20.48■□□□□ 0.87
RXRBP28702 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
RXRBP28702 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC20.47■□□□□ 0.87
RXRBP28702 AC090164.3-201ENST00000610780 2143 ntBASIC20.47■□□□□ 0.87
RXRBP28702 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RXRBP28702 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC20.47■□□□□ 0.87
RXRBP28702 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RXRBP28702 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RXRBP28702 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
RXRBP28702 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RXRBP28702 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RXRBP28702 PSMD4P1-201ENST00000433951 1109 ntBASIC20.47■□□□□ 0.87
RXRBP28702 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC20.47■□□□□ 0.87
RXRBP28702 POU5F1P2-201ENST00000521750 823 ntBASIC20.47■□□□□ 0.87
RXRBP28702 AP002490.2-201ENST00000524791 560 ntBASIC20.47■□□□□ 0.87
RXRBP28702 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC20.47■□□□□ 0.87
RXRBP28702 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RXRBP28702 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC20.47■□□□□ 0.87
RXRBP28702 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC20.47■□□□□ 0.87
RXRBP28702 RPL17P45-201ENST00000586289 509 ntBASIC20.47■□□□□ 0.87
RXRBP28702 AC233280.19-201ENST00000633223 136 ntBASIC20.47■□□□□ 0.87
RXRBP28702 PCBP2-OT1-201ENST00000634357 590 ntBASIC20.47■□□□□ 0.87
RXRBP28702 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
RXRBP28702 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
RXRBP28702 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC20.47■□□□□ 0.87
RXRBP28702 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RXRBP28702 LRRC59-203ENST00000576448 1531 ntBASIC20.47■□□□□ 0.87
RXRBP28702 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RXRBP28702 LINC01144-201ENST00000626198 1710 ntBASIC20.47■□□□□ 0.87
RXRBP28702 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
RXRBP28702 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RXRBP28702 BX323043.1-201ENST00000641006 1765 ntBASIC20.46■□□□□ 0.87
RXRBP28702 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RXRBP28702 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
RXRBP28702 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
RXRBP28702 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
RXRBP28702 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
RXRBP28702 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RXRBP28702 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC20.46■□□□□ 0.87
RXRBP28702 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RXRBP28702 HLA-A-202ENST00000376806 1854 ntBASIC20.46■□□□□ 0.87
RXRBP28702 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
RXRBP28702 BCL2-203ENST00000589955 5011 ntBASIC20.46■□□□□ 0.87
RXRBP28702 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
RXRBP28702 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
RXRBP28702 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RXRBP28702 RPS15-201ENST00000233609 534 ntTSL 2 BASIC20.46■□□□□ 0.87
RXRBP28702 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RXRBP28702 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RXRBP28702 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
RXRBP28702 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC20.46■□□□□ 0.87
RXRBP28702 AL391280.1-201ENST00000506969 1062 ntBASIC20.46■□□□□ 0.87
RXRBP28702 AP003171.2-201ENST00000528208 925 ntBASIC20.46■□□□□ 0.87
RXRBP28702 AP003398.1-201ENST00000531124 318 ntBASIC20.46■□□□□ 0.87
RXRBP28702 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC20.46■□□□□ 0.87
RXRBP28702 RPS15-202ENST00000585665 467 ntTSL 3 BASIC20.46■□□□□ 0.87
RXRBP28702 RPS15-205ENST00000586686 562 ntTSL 5 BASIC20.46■□□□□ 0.87
RXRBP28702 RPS15-208ENST00000591804 711 ntTSL 5 BASIC20.46■□□□□ 0.87
RXRBP28702 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RXRBP28702 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RXRBP28702 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC20.46■□□□□ 0.87
RXRBP28702 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.45■□□□□ 0.86
RXRBP28702 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RXRBP28702 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.45■□□□□ 0.86
RXRBP28702 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC20.45■□□□□ 0.86
RXRBP28702 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms