Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.26■□□□□ 0.51
SMARCA1P28370 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SMARCA1P28370 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMARCA1P28370 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SMARCA1P28370 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18.26■□□□□ 0.51
SMARCA1P28370 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
SMARCA1P28370 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
SMARCA1P28370 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC18.25■□□□□ 0.51
SMARCA1P28370 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC18.25■□□□□ 0.51
SMARCA1P28370 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
SMARCA1P28370 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.25■□□□□ 0.51
SMARCA1P28370 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 SPDYE19P-201ENST00000338590 713 ntBASIC18.25■□□□□ 0.51
SMARCA1P28370 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
SMARCA1P28370 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
SMARCA1P28370 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC18.25■□□□□ 0.51
SMARCA1P28370 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC18.25■□□□□ 0.51
SMARCA1P28370 KRT18P64-201ENST00000434946 1219 ntBASIC18.25■□□□□ 0.51
SMARCA1P28370 AL589987.1-201ENST00000453380 819 ntBASIC18.25■□□□□ 0.51
SMARCA1P28370 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC18.25■□□□□ 0.51
SMARCA1P28370 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC18.25■□□□□ 0.51
SMARCA1P28370 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC18.25■□□□□ 0.51
SMARCA1P28370 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC18.25■□□□□ 0.51
SMARCA1P28370 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC18.25■□□□□ 0.51
SMARCA1P28370 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC18.25■□□□□ 0.51
SMARCA1P28370 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC18.25■□□□□ 0.51
SMARCA1P28370 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC18.25■□□□□ 0.51
SMARCA1P28370 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SMARCA1P28370 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.25■□□□□ 0.51
SMARCA1P28370 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SMARCA1P28370 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC18.25■□□□□ 0.51
SMARCA1P28370 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC18.25■□□□□ 0.51
SMARCA1P28370 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 AC018695.7-201ENST00000624587 2492 ntBASIC18.25■□□□□ 0.51
SMARCA1P28370 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMARCA1P28370 OR6D1P-203ENST00000641209 4860 ntBASIC18.24■□□□□ 0.51
SMARCA1P28370 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMARCA1P28370 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMARCA1P28370 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SMARCA1P28370 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC18.24■□□□□ 0.51
SMARCA1P28370 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.24■□□□□ 0.51
SMARCA1P28370 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC18.24■□□□□ 0.51
SMARCA1P28370 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMARCA1P28370 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMARCA1P28370 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SMARCA1P28370 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMARCA1P28370 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
SMARCA1P28370 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.24■□□□□ 0.51
SMARCA1P28370 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMARCA1P28370 GOLGA6L11P-201ENST00000417252 1298 ntBASIC18.24■□□□□ 0.51
SMARCA1P28370 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC18.24■□□□□ 0.51
SMARCA1P28370 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC18.24■□□□□ 0.51
SMARCA1P28370 CD81-207ENST00000481687 890 ntTSL 2 BASIC18.24■□□□□ 0.51
SMARCA1P28370 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC18.24■□□□□ 0.51
SMARCA1P28370 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC18.24■□□□□ 0.51
SMARCA1P28370 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC18.24■□□□□ 0.51
SMARCA1P28370 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SMARCA1P28370 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC18.24■□□□□ 0.51
SMARCA1P28370 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC18.24■□□□□ 0.51
SMARCA1P28370 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMARCA1P28370 SLC7A15P-201ENST00000424028 1363 ntBASIC18.24■□□□□ 0.51
SMARCA1P28370 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC18.24■□□□□ 0.51
SMARCA1P28370 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMARCA1P28370 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SMARCA1P28370 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMARCA1P28370 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMARCA1P28370 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SMARCA1P28370 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMARCA1P28370 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMARCA1P28370 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMARCA1P28370 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMARCA1P28370 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.24■□□□□ 0.51
SMARCA1P28370 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC18.23■□□□□ 0.51
SMARCA1P28370 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms