Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC002347.1-201ENST00000569543 541 ntBASIC12.27□□□□□ -0.45
HLA-DMBP28068 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 MIR3687-2-201ENST00000577708 61 ntBASIC12.27□□□□□ -0.45
HLA-DMBP28068 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 AL078644.1-201ENST00000609881 752 ntBASIC12.27□□□□□ -0.45
HLA-DMBP28068 MIR3687-1-201ENST00000614492 61 ntBASIC12.27□□□□□ -0.45
HLA-DMBP28068 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 AC126755.1-201ENST00000525846 6405 ntBASIC12.27□□□□□ -0.45
HLA-DMBP28068 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 BCAR1-209ENST00000546196 1340 ntBASIC12.27□□□□□ -0.45
HLA-DMBP28068 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 AC025580.3-201ENST00000617932 1424 ntBASIC12.27□□□□□ -0.45
HLA-DMBP28068 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 PGR-210ENST00000619228 3038 ntTSL 5 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 IMP4-203ENST00000409935 958 ntTSL 5 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 CFL1-202ENST00000524553 860 ntTSL 2 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 AC023141.13-201ENST00000604991 943 ntBASIC12.26□□□□□ -0.45
HLA-DMBP28068 AQP6-205ENST00000618286 829 ntTSL 5 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 AC004877.2-201ENST00000623941 599 ntBASIC12.26□□□□□ -0.45
HLA-DMBP28068 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
HLA-DMBP28068 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DMBP28068 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 AC073439.1-201ENST00000624121 1774 ntBASIC12.25□□□□□ -0.45
HLA-DMBP28068 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 DKFZP434H168-201ENST00000567381 1905 ntBASIC12.25□□□□□ -0.45
HLA-DMBP28068 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms