Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL8A1P27658 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL8A1P27658 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL8A1P27658 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
COL8A1P27658 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC13.96□□□□□ -0.18
COL8A1P27658 NME9-203ENST00000383180 2133 ntTSL 2 BASIC13.96□□□□□ -0.18
COL8A1P27658 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC13.96□□□□□ -0.18
COL8A1P27658 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
COL8A1P27658 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
COL8A1P27658 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
COL8A1P27658 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.95□□□□□ -0.18
COL8A1P27658 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC13.95□□□□□ -0.18
COL8A1P27658 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC13.95□□□□□ -0.18
COL8A1P27658 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 AC134312.5-201ENST00000568031 1313 ntBASIC13.95□□□□□ -0.18
COL8A1P27658 GRN-222ENST00000639447 1314 ntTSL 2 BASIC13.95□□□□□ -0.18
COL8A1P27658 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC13.95□□□□□ -0.18
COL8A1P27658 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 SLC25A1P3-201ENST00000395415 828 ntBASIC13.95□□□□□ -0.18
COL8A1P27658 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 BAATP1-201ENST00000412284 1225 ntBASIC13.95□□□□□ -0.18
COL8A1P27658 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC13.95□□□□□ -0.18
COL8A1P27658 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC13.95□□□□□ -0.18
COL8A1P27658 AC093724.1-201ENST00000448659 1027 ntBASIC13.95□□□□□ -0.18
COL8A1P27658 REEP1-202ENST00000453231 940 ntTSL 2 BASIC13.95□□□□□ -0.18
COL8A1P27658 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC13.95□□□□□ -0.18
COL8A1P27658 AC017007.3-201ENST00000479865 435 ntBASIC13.95□□□□□ -0.18
COL8A1P27658 RPL8-205ENST00000527914 551 ntTSL 3 BASIC13.95□□□□□ -0.18
COL8A1P27658 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC13.95□□□□□ -0.18
COL8A1P27658 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC13.95□□□□□ -0.18
COL8A1P27658 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC13.95□□□□□ -0.18
COL8A1P27658 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC13.95□□□□□ -0.18
COL8A1P27658 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC13.95□□□□□ -0.18
COL8A1P27658 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC13.95□□□□□ -0.18
COL8A1P27658 Metazoa_SRP.67-201ENST00000617099 296 ntBASIC13.95□□□□□ -0.18
COL8A1P27658 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
COL8A1P27658 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC13.95□□□□□ -0.18
COL8A1P27658 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
COL8A1P27658 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC13.95□□□□□ -0.18
COL8A1P27658 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 STK24-203ENST00000397517 4578 ntTSL 2 BASIC13.95□□□□□ -0.18
COL8A1P27658 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL8A1P27658 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.94□□□□□ -0.18
COL8A1P27658 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
COL8A1P27658 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC13.94□□□□□ -0.18
COL8A1P27658 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
COL8A1P27658 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 HIST3H2BA-201ENST00000436555 524 ntBASIC13.94□□□□□ -0.18
COL8A1P27658 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 FAM86LP-201ENST00000478302 853 ntBASIC13.94□□□□□ -0.18
COL8A1P27658 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
COL8A1P27658 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
COL8A1P27658 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC13.94□□□□□ -0.18
COL8A1P27658 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
COL8A1P27658 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC13.94□□□□□ -0.18
COL8A1P27658 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 AL391069.4-201ENST00000609583 481 ntBASIC13.94□□□□□ -0.18
COL8A1P27658 AC008687.7-202ENST00000637404 953 ntBASIC13.94□□□□□ -0.18
COL8A1P27658 PCDHA12-202ENST00000613593 2588 ntBASIC13.94□□□□□ -0.18
COL8A1P27658 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC13.94□□□□□ -0.18
COL8A1P27658 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
COL8A1P27658 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC13.94□□□□□ -0.18
COL8A1P27658 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC13.94□□□□□ -0.18
COL8A1P27658 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms