Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.87■□□□□ 0.61
HMGB1P09429 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 MIR4313-201ENST00000580760 101 ntBASIC18.87■□□□□ 0.61
HMGB1P09429 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.87■□□□□ 0.61
HMGB1P09429 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 RN7SL828P-201ENST00000607615 303 ntBASIC18.87■□□□□ 0.61
HMGB1P09429 AC020658.6-201ENST00000623564 1870 ntBASIC18.87■□□□□ 0.61
HMGB1P09429 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC18.87■□□□□ 0.61
HMGB1P09429 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.86■□□□□ 0.61
HMGB1P09429 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC18.86■□□□□ 0.61
HMGB1P09429 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 AP003680.1-201ENST00000598970 3660 ntBASIC18.86■□□□□ 0.61
HMGB1P09429 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC18.86■□□□□ 0.61
HMGB1P09429 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
HMGB1P09429 KLK8-202ENST00000320838 456 ntTSL 5 BASIC18.86■□□□□ 0.61
HMGB1P09429 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
HMGB1P09429 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC18.86■□□□□ 0.61
HMGB1P09429 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18.86■□□□□ 0.61
HMGB1P09429 HLA-J-203ENST00000494367 1087 ntBASIC18.86■□□□□ 0.61
HMGB1P09429 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.86■□□□□ 0.61
HMGB1P09429 AC027612.4-201ENST00000605371 583 ntBASIC18.86■□□□□ 0.61
HMGB1P09429 AL133215.2-201ENST00000609242 977 ntBASIC18.86■□□□□ 0.61
HMGB1P09429 MIR6080-201ENST00000617359 66 ntBASIC18.86■□□□□ 0.61
HMGB1P09429 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC18.86■□□□□ 0.61
HMGB1P09429 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGB1P09429 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
HMGB1P09429 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC18.85■□□□□ 0.61
HMGB1P09429 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
HMGB1P09429 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB1P09429 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB1P09429 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB1P09429 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC18.85■□□□□ 0.61
HMGB1P09429 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB1P09429 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB1P09429 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
HMGB1P09429 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB1P09429 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB1P09429 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC18.85■□□□□ 0.61
HMGB1P09429 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.85■□□□□ 0.61
HMGB1P09429 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB1P09429 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.85■□□□□ 0.61
HMGB1P09429 MIR1233-2-201ENST00000408138 82 ntBASIC18.85■□□□□ 0.61
HMGB1P09429 MIR1233-1-201ENST00000408722 82 ntBASIC18.85■□□□□ 0.61
HMGB1P09429 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB1P09429 DNAJB3-202ENST00000449667 1266 ntBASIC18.85■□□□□ 0.61
HMGB1P09429 MIR4453-201ENST00000584019 89 ntBASIC18.85■□□□□ 0.61
HMGB1P09429 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC18.85■□□□□ 0.61
HMGB1P09429 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB1P09429 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB1P09429 AC022532.1-201ENST00000624563 1728 ntBASIC18.85■□□□□ 0.61
HMGB1P09429 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC18.85■□□□□ 0.61
HMGB1P09429 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.85■□□□□ 0.61
HMGB1P09429 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.85■□□□□ 0.61
HMGB1P09429 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB1P09429 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18.85■□□□□ 0.61
HMGB1P09429 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB1P09429 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
HMGB1P09429 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.84■□□□□ 0.61
HMGB1P09429 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB1P09429 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB1P09429 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
HMGB1P09429 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB1P09429 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB1P09429 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HMGB1P09429 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.84■□□□□ 0.61
HMGB1P09429 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
HMGB1P09429 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB1P09429 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC18.84■□□□□ 0.61
HMGB1P09429 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB1P09429 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB1P09429 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
HMGB1P09429 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms