Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC13.71□□□□□ -0.21
SDCBPO00560 UNC93B6-202ENST00000528242 690 ntBASIC13.71□□□□□ -0.21
SDCBPO00560 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC13.71□□□□□ -0.21
SDCBPO00560 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC13.71□□□□□ -0.21
SDCBPO00560 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SDCBPO00560 MIR4515-201ENST00000584082 81 ntBASIC13.71□□□□□ -0.21
SDCBPO00560 ACTL9-202ENST00000612068 1252 ntBASIC13.71□□□□□ -0.21
SDCBPO00560 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SDCBPO00560 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SDCBPO00560 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SDCBPO00560 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SDCBPO00560 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SDCBPO00560 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC13.71□□□□□ -0.21
SDCBPO00560 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
SDCBPO00560 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SDCBPO00560 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC13.71□□□□□ -0.22
SDCBPO00560 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
SDCBPO00560 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
SDCBPO00560 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SDCBPO00560 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.22
SDCBPO00560 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SDCBPO00560 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SDCBPO00560 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SDCBPO00560 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.22
SDCBPO00560 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
SDCBPO00560 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
SDCBPO00560 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC13.71□□□□□ -0.22
SDCBPO00560 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SDCBPO00560 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
SDCBPO00560 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC13.7□□□□□ -0.22
SDCBPO00560 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SDCBPO00560 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.7□□□□□ -0.22
SDCBPO00560 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
SDCBPO00560 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC13.7□□□□□ -0.22
SDCBPO00560 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
SDCBPO00560 AC020658.6-201ENST00000623564 1870 ntBASIC13.7□□□□□ -0.22
SDCBPO00560 MYO15B-237ENST00000642007 4893 ntBASIC13.7□□□□□ -0.22
SDCBPO00560 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC13.7□□□□□ -0.22
SDCBPO00560 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SDCBPO00560 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SDCBPO00560 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
SDCBPO00560 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
SDCBPO00560 AC007326.2-201ENST00000624224 7579 ntBASIC13.7□□□□□ -0.22
SDCBPO00560 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
SDCBPO00560 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SDCBPO00560 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SDCBPO00560 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
SDCBPO00560 DPM2-202ENST00000373110 738 ntTSL 2 BASIC13.7□□□□□ -0.22
SDCBPO00560 VN2R19P-201ENST00000442399 1052 ntBASIC13.7□□□□□ -0.22
SDCBPO00560 AC009947.1-201ENST00000444350 727 ntBASIC13.7□□□□□ -0.22
SDCBPO00560 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC13.7□□□□□ -0.22
SDCBPO00560 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
SDCBPO00560 MTRF1LP2-201ENST00000506027 1122 ntBASIC13.7□□□□□ -0.22
SDCBPO00560 RNA5SP415-201ENST00000517246 115 ntBASIC13.7□□□□□ -0.22
SDCBPO00560 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
SDCBPO00560 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SDCBPO00560 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC13.7□□□□□ -0.22
SDCBPO00560 SLC25A6P4-201ENST00000586535 553 ntBASIC13.7□□□□□ -0.22
SDCBPO00560 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC13.7□□□□□ -0.22
SDCBPO00560 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC13.7□□□□□ -0.22
SDCBPO00560 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC13.7□□□□□ -0.22
SDCBPO00560 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SDCBPO00560 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC13.7□□□□□ -0.22
SDCBPO00560 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC13.7□□□□□ -0.22
SDCBPO00560 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SDCBPO00560 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC13.7□□□□□ -0.22
SDCBPO00560 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.7□□□□□ -0.22
SDCBPO00560 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SDCBPO00560 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC13.7□□□□□ -0.22
SDCBPO00560 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SDCBPO00560 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
SDCBPO00560 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SDCBPO00560 OR2I1P-210ENST00000642037 4691 ntBASIC13.7□□□□□ -0.22
SDCBPO00560 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SDCBPO00560 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC13.7□□□□□ -0.22
SDCBPO00560 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SDCBPO00560 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SDCBPO00560 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC13.7□□□□□ -0.22
SDCBPO00560 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SDCBPO00560 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
SDCBPO00560 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.69□□□□□ -0.22
SDCBPO00560 AC006486.2-201ENST00000624246 2199 ntBASIC13.69□□□□□ -0.22
SDCBPO00560 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC13.69□□□□□ -0.22
SDCBPO00560 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
SDCBPO00560 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
SDCBPO00560 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
SDCBPO00560 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC13.69□□□□□ -0.22
SDCBPO00560 AC009078.2-202ENST00000463353 338 ntBASIC13.69□□□□□ -0.22
SDCBPO00560 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms