Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHA3Q9Y5H8 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHA3Q9Y5H8 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHA3Q9Y5H8 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHA3Q9Y5H8 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHA3Q9Y5H8 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHA3Q9Y5H8 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.76■□□□□ 0.27
PCDHA3Q9Y5H8 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHA3Q9Y5H8 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHA3Q9Y5H8 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDHA3Q9Y5H8 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHA3Q9Y5H8 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHA3Q9Y5H8 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 REXO1L1P-202ENST00000608646 1974 ntBASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 AC112693.3-201ENST00000624819 1983 ntBASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 AC004987.2-201ENST00000395959 1148 ntBASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 AC027307.2-201ENST00000591252 911 ntBASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 AC008267.7-201ENST00000624570 1194 ntBASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 LINC02228-204ENST00000642115 2962 ntBASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 ZNF259P1-201ENST00000407656 1365 ntBASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
PCDHA3Q9Y5H8 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 AC009090.5-201ENST00000624886 2285 ntBASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 AC142381.1-201ENST00000426099 345 ntBASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 AL671277.1-201ENST00000429656 993 ntBASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 RNA5SP416-201ENST00000516838 111 ntBASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 AL135744.1-201ENST00000565098 629 ntBASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
PCDHA3Q9Y5H8 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHA3Q9Y5H8 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHA3Q9Y5H8 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.73■□□□□ 0.27
PCDHA3Q9Y5H8 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.73■□□□□ 0.27
PCDHA3Q9Y5H8 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
PCDHA3Q9Y5H8 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms