Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 AL691432.1-201ENST00000596308 1422 ntBASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 YBX1P6-201ENST00000442962 1002 ntBASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 AC245100.5-201ENST00000452108 331 ntBASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 AC007551.1-201ENST00000457394 519 ntBASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 AC243562.2-201ENST00000561247 970 ntBASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
PCDHGA1Q9Y5H4 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 INTS4P2-202ENST00000614726 2019 ntBASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 TOMM22P5-201ENST00000416399 439 ntBASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 AL513477.1-201ENST00000602865 2407 ntBASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 KRT8P37-201ENST00000451609 1420 ntBASIC15.34■□□□□ 0.05
PCDHGA1Q9Y5H4 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms