Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 AP000568.1-201ENST00000282964 442 ntBASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 AC004987.2-201ENST00000395959 1148 ntBASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 EIF2S2P3-201ENST00000428356 999 ntBASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 CEND1P1-201ENST00000451006 455 ntBASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 AC105917.1-201ENST00000506637 2539 ntBASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 CD82-202ENST00000342935 967 ntTSL 5 BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 ELOCP6-201ENST00000429066 328 ntBASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 ELOCP12-201ENST00000458706 328 ntBASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 ALG1L5P-201ENST00000482043 771 ntBASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 YBX1P5-201ENST00000509441 847 ntBASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 AL671883.3-201ENST00000603274 991 ntBASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 AL162727.3-201ENST00000635661 2787 ntBASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 AL691432.1-201ENST00000596308 1422 ntBASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS9D1Q9Y2B5 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS9D1Q9Y2B5 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.99■□□□□ 0.15
VPS9D1Q9Y2B5 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.99■□□□□ 0.15
VPS9D1Q9Y2B5 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS9D1Q9Y2B5 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS9D1Q9Y2B5 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.99■□□□□ 0.15
VPS9D1Q9Y2B5 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.99■□□□□ 0.15
VPS9D1Q9Y2B5 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
VPS9D1Q9Y2B5 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
VPS9D1Q9Y2B5 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.99■□□□□ 0.15
VPS9D1Q9Y2B5 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS9D1Q9Y2B5 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.99■□□□□ 0.15
VPS9D1Q9Y2B5 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC15.99■□□□□ 0.15
VPS9D1Q9Y2B5 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
VPS9D1Q9Y2B5 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.99■□□□□ 0.15
VPS9D1Q9Y2B5 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.99■□□□□ 0.15
VPS9D1Q9Y2B5 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.99■□□□□ 0.15
VPS9D1Q9Y2B5 AL139010.1-201ENST00000454878 894 ntBASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms