Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TMBIM7P-203ENST00000641617 1718 ntBASIC13□□□□□ -0.33
FOXA2Q9Y261 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
FOXA2Q9Y261 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 AC006058.4-201ENST00000624016 1670 ntBASIC13□□□□□ -0.33
FOXA2Q9Y261 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC13□□□□□ -0.33
FOXA2Q9Y261 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 AP001282.1-201ENST00000531301 1499 ntBASIC13□□□□□ -0.33
FOXA2Q9Y261 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
FOXA2Q9Y261 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 AKAP8P1-201ENST00000434743 1349 ntBASIC13□□□□□ -0.33
FOXA2Q9Y261 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 CASK-202ENST00000378158 3848 ntTSL 5 BASIC13□□□□□ -0.33
FOXA2Q9Y261 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 AL355306.1-201ENST00000415580 579 ntBASIC13□□□□□ -0.33
FOXA2Q9Y261 GPX1P2-201ENST00000429271 606 ntBASIC13□□□□□ -0.33
FOXA2Q9Y261 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 RN7SL589P-201ENST00000481268 310 ntBASIC13□□□□□ -0.33
FOXA2Q9Y261 ALG1L5P-201ENST00000482043 771 ntBASIC13□□□□□ -0.33
FOXA2Q9Y261 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC13□□□□□ -0.33
FOXA2Q9Y261 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC13□□□□□ -0.33
FOXA2Q9Y261 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC13□□□□□ -0.33
FOXA2Q9Y261 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC13□□□□□ -0.33
FOXA2Q9Y261 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC13□□□□□ -0.33
FOXA2Q9Y261 AC099522.2-201ENST00000607001 744 ntBASIC13□□□□□ -0.33
FOXA2Q9Y261 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
FOXA2Q9Y261 AC092902.6-201ENST00000641783 218 ntBASIC13□□□□□ -0.33
FOXA2Q9Y261 MYB-201ENST00000316528 3571 ntTSL 5 BASIC13□□□□□ -0.33
FOXA2Q9Y261 MYB-241ENST00000616088 3573 ntTSL 5 BASIC13□□□□□ -0.33
FOXA2Q9Y261 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
FOXA2Q9Y261 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 LCK-206ENST00000373564 2137 ntTSL 5 BASIC13□□□□□ -0.33
FOXA2Q9Y261 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
FOXA2Q9Y261 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC13□□□□□ -0.33
FOXA2Q9Y261 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC13□□□□□ -0.33
FOXA2Q9Y261 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC13□□□□□ -0.33
FOXA2Q9Y261 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 SSR4P1-203ENST00000599569 2260 ntBASIC12.99□□□□□ -0.33
FOXA2Q9Y261 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 CD82-202ENST00000342935 967 ntTSL 5 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 AL671277.1-201ENST00000429656 993 ntBASIC12.99□□□□□ -0.33
FOXA2Q9Y261 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 IGHV3OR16-6-201ENST00000568775 360 ntBASIC12.99□□□□□ -0.33
FOXA2Q9Y261 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 MIR4321-201ENST00000592276 80 ntBASIC12.99□□□□□ -0.33
FOXA2Q9Y261 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 ELL2P1-201ENST00000413990 1906 ntBASIC12.99□□□□□ -0.33
FOXA2Q9Y261 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms