Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 AC007967.4-201ENST00000614700 386 ntBASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 LINC00628-201ENST00000628516 1289 ntBASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 REXO1L1P-202ENST00000608646 1974 ntBASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4E1Q9UPM8 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 SPDYE7P-202ENST00000420373 878 ntBASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 TSEN15P1-201ENST00000423257 515 ntBASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 MIR4453-201ENST00000584019 89 ntBASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 AC018892.3-201ENST00000623986 2499 ntBASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP4E1Q9UPM8 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 KRT8P37-201ENST00000451609 1420 ntBASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 AL139400.1-201ENST00000366220 510 ntBASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 HLA-J-203ENST00000494367 1087 ntBASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 AC109322.1-201ENST00000524499 1264 ntBASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 AL512356.2-201ENST00000546955 174 ntBASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 AP001160.2-201ENST00000596071 487 ntBASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 AC139530.3-201ENST00000620344 690 ntBASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms