Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX2Q99626 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.41■□□□□ 0.22
CDX2Q99626 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
CDX2Q99626 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.41■□□□□ 0.22
CDX2Q99626 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC16.41■□□□□ 0.22
CDX2Q99626 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC16.41■□□□□ 0.22
CDX2Q99626 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX2Q99626 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX2Q99626 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX2Q99626 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX2Q99626 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDX2Q99626 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC16.41■□□□□ 0.22
CDX2Q99626 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX2Q99626 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX2Q99626 RNU1-114P-201ENST00000365297 166 ntBASIC16.41■□□□□ 0.22
CDX2Q99626 AL645728.1-201ENST00000366221 2101 ntBASIC16.41■□□□□ 0.22
CDX2Q99626 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC16.41■□□□□ 0.22
CDX2Q99626 AL627231.1-201ENST00000394467 1125 ntBASIC16.41■□□□□ 0.22
CDX2Q99626 ISCA2P1-201ENST00000425548 448 ntBASIC16.41■□□□□ 0.22
CDX2Q99626 AC012362.1-201ENST00000434906 739 ntBASIC16.41■□□□□ 0.22
CDX2Q99626 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX2Q99626 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC16.41■□□□□ 0.22
CDX2Q99626 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC16.41■□□□□ 0.22
CDX2Q99626 AP002803.1-201ENST00000528836 498 ntBASIC16.41■□□□□ 0.22
CDX2Q99626 DNM1P51-201ENST00000558149 522 ntBASIC16.41■□□□□ 0.22
CDX2Q99626 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
CDX2Q99626 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.41■□□□□ 0.22
CDX2Q99626 ZACNP1-201ENST00000612259 710 ntBASIC16.41■□□□□ 0.22
CDX2Q99626 AC051619.9-201ENST00000623237 597 ntBASIC16.41■□□□□ 0.22
CDX2Q99626 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.41■□□□□ 0.22
CDX2Q99626 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.41■□□□□ 0.22
CDX2Q99626 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX2Q99626 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
CDX2Q99626 AC074138.1-201ENST00000611182 1303 ntBASIC16.41■□□□□ 0.22
CDX2Q99626 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX2Q99626 ANKRD30BP2-201ENST00000435744 1610 ntBASIC16.41■□□□□ 0.22
CDX2Q99626 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.41■□□□□ 0.22
CDX2Q99626 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX2Q99626 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.4■□□□□ 0.22
CDX2Q99626 REXO1L1P-202ENST00000608646 1974 ntBASIC16.4■□□□□ 0.22
CDX2Q99626 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
CDX2Q99626 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDX2Q99626 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDX2Q99626 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.4■□□□□ 0.22
CDX2Q99626 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX2Q99626 LINC01144-201ENST00000626198 1710 ntBASIC16.4■□□□□ 0.22
CDX2Q99626 AL138688.1-201ENST00000624851 1594 ntBASIC16.4■□□□□ 0.22
CDX2Q99626 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDX2Q99626 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX2Q99626 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX2Q99626 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDX2Q99626 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX2Q99626 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CDX2Q99626 AL512430.1-201ENST00000392575 860 ntBASIC16.4■□□□□ 0.22
CDX2Q99626 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX2Q99626 RGS5-214ENST00000429865 754 ntTSL 3 BASIC16.4■□□□□ 0.22
CDX2Q99626 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC16.4■□□□□ 0.22
CDX2Q99626 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDX2Q99626 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC16.4■□□□□ 0.22
CDX2Q99626 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX2Q99626 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC16.4■□□□□ 0.22
CDX2Q99626 AC073413.1-201ENST00000603927 732 ntBASIC16.4■□□□□ 0.22
CDX2Q99626 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CDX2Q99626 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX2Q99626 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDX2Q99626 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX2Q99626 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
CDX2Q99626 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 TBC1D3J-201ENST00000620719 1426 ntBASIC16.39■□□□□ 0.21
CDX2Q99626 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.39■□□□□ 0.21
CDX2Q99626 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CDX2Q99626 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CDX2Q99626 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC16.39■□□□□ 0.21
CDX2Q99626 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CDX2Q99626 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC16.39■□□□□ 0.21
CDX2Q99626 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC16.39■□□□□ 0.21
CDX2Q99626 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC16.39■□□□□ 0.21
CDX2Q99626 AC242376.2-201ENST00000619355 883 ntBASIC16.39■□□□□ 0.21
CDX2Q99626 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC16.39■□□□□ 0.21
CDX2Q99626 AP000974.1-201ENST00000623909 2387 ntBASIC16.39■□□□□ 0.21
CDX2Q99626 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.39■□□□□ 0.21
CDX2Q99626 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDX2Q99626 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms