Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 MIR658-201ENST00000385210 100 ntBASIC15.55■□□□□ 0.08
LMX1AQ8TE12 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 AC074338.1-201ENST00000416825 156 ntBASIC15.55■□□□□ 0.08
LMX1AQ8TE12 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 APOC4-201ENST00000591600 348 ntTSL 3 BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1AQ8TE12 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 AP001282.1-201ENST00000531301 1499 ntBASIC15.54■□□□□ 0.08
LMX1AQ8TE12 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 NSL1-201ENST00000366976 722 ntTSL 2 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 PKIG-203ENST00000372887 769 ntTSL 3 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 MIR1909-201ENST00000411312 80 ntBASIC15.54■□□□□ 0.08
LMX1AQ8TE12 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 MIR6805-201ENST00000615055 62 ntBASIC15.54■□□□□ 0.08
LMX1AQ8TE12 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1AQ8TE12 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms