Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 ABALON-201ENST00000629058 1903 ntBASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 TUBBP5-203ENST00000508529 1334 ntBASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 PGGT1BP2-201ENST00000398621 1028 ntBASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 AZGP1P1-201ENST00000411909 902 ntBASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 CD8B2-202ENST00000417670 633 ntBASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 TARDBPP1-201ENST00000442013 1203 ntBASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 SERPINA13P-202ENST00000478994 924 ntBASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 NUP210P1-202ENST00000504322 710 ntBASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 RN7SL774P-201ENST00000577467 290 ntBASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 RPL35-206ENST00000629845 340 ntTSL 5 BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 GRN-214ENST00000589265 1632 ntTSL 5 BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 CROCCP1-201ENST00000426910 5675 ntBASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 REXO1L8P-201ENST00000604378 1897 ntBASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.84■□□□□ 0.61
SMC1BQ8NDV3 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SMC1BQ8NDV3 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
SMC1BQ8NDV3 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SMC1BQ8NDV3 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
SMC1BQ8NDV3 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SMC1BQ8NDV3 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SMC1BQ8NDV3 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 PTK2-225ENST00000520892 571 ntTSL 4 BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 GPX4-206ENST00000588919 803 ntTSL 2 BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 INO80C-210ENST00000590757 595 ntTSL 2 BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 AC145423.3-201ENST00000615987 467 ntBASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMC1BQ8NDV3 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 AL355312.1-201ENST00000407115 2176 ntBASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 AC098935.1-201ENST00000446057 611 ntBASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 KRT18P25-201ENST00000508931 1278 ntBASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms