Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 AP001282.1-201ENST00000531301 1499 ntBASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 LINC02447-202ENST00000501888 2146 ntBASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 NORAD-201ENST00000565493 5339 ntBASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 CD81-202ENST00000381036 880 ntTSL 3 BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 SPDYE14P-201ENST00000442619 822 ntBASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 AL139010.1-201ENST00000454878 894 ntBASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 AC243562.2-201ENST00000561247 970 ntBASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 NAA38-207ENST00000576861 556 ntTSL 3 BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 HNRNPFP1-201ENST00000391730 1133 ntBASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 TSEN15P1-201ENST00000423257 515 ntBASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 HLA-J-203ENST00000494367 1087 ntBASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 AC004449.1-201ENST00000564240 433 ntBASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 MIR6080-201ENST00000617359 66 ntBASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 AC069224.1-201ENST00000566372 1715 ntBASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE3Q6ZMZ3 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
SYNE3Q6ZMZ3 AC010491.1-201ENST00000563101 2797 ntBASIC18.89■□□□□ 0.62
SYNE3Q6ZMZ3 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 GPALPP1-207ENST00000611650 899 ntBASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 AC006538.3-201ENST00000612495 578 ntBASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 AC008677.1-201ENST00000519230 1561 ntBASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE3Q6ZMZ3 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms