Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 COQ9-214ENST00000567933 882 ntTSL 3 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 AC051619.7-201ENST00000568314 623 ntBASIC19.36■□□□□ 0.69
VPS53Q5VIR6 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
VPS53Q5VIR6 HLA-DQB2-231ENST00000435145 2026 ntBASIC19.35■□□□□ 0.69
VPS53Q5VIR6 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 AC025678.2-201ENST00000562061 970 ntBASIC19.35■□□□□ 0.69
VPS53Q5VIR6 AC105021.1-202ENST00000570572 669 ntBASIC19.35■□□□□ 0.69
VPS53Q5VIR6 AL133215.2-201ENST00000609242 977 ntBASIC19.35■□□□□ 0.69
VPS53Q5VIR6 AC007967.4-201ENST00000614700 386 ntBASIC19.35■□□□□ 0.69
VPS53Q5VIR6 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS53Q5VIR6 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 TUBB3P1-201ENST00000405796 1332 ntBASIC19.34■□□□□ 0.69
VPS53Q5VIR6 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 WRB-204ENST00000398753 699 ntTSL 3 BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 NAA38-207ENST00000576861 556 ntTSL 3 BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 AC106028.4-201ENST00000614509 607 ntBASIC19.34■□□□□ 0.69
VPS53Q5VIR6 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms