Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC11.26□□□□□ -0.61
PRKDCP78527 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC11.26□□□□□ -0.61
PRKDCP78527 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC11.26□□□□□ -0.61
PRKDCP78527 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
PRKDCP78527 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
PRKDCP78527 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PRKDCP78527 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PRKDCP78527 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC11.25□□□□□ -0.61
PRKDCP78527 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PRKDCP78527 TPM3P8-201ENST00000330554 643 ntBASIC11.25□□□□□ -0.61
PRKDCP78527 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC11.25□□□□□ -0.61
PRKDCP78527 ISCA2P1-201ENST00000425548 448 ntBASIC11.25□□□□□ -0.61
PRKDCP78527 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
PRKDCP78527 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC11.25□□□□□ -0.61
PRKDCP78527 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC11.25□□□□□ -0.61
PRKDCP78527 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
PRKDCP78527 RN7SL67P-201ENST00000492147 296 ntBASIC11.25□□□□□ -0.61
PRKDCP78527 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
PRKDCP78527 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
PRKDCP78527 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC11.25□□□□□ -0.61
PRKDCP78527 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC11.25□□□□□ -0.61
PRKDCP78527 AC132938.4-201ENST00000623835 848 ntBASIC11.25□□□□□ -0.61
PRKDCP78527 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC11.25□□□□□ -0.61
PRKDCP78527 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC11.25□□□□□ -0.61
PRKDCP78527 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC11.25□□□□□ -0.61
PRKDCP78527 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
PRKDCP78527 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC11.25□□□□□ -0.61
PRKDCP78527 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
PRKDCP78527 PCGF3-213ENST00000620529 1899 ntBASIC11.25□□□□□ -0.61
PRKDCP78527 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC11.25□□□□□ -0.61
PRKDCP78527 AL136309.1-201ENST00000403917 691 ntBASIC11.25□□□□□ -0.61
PRKDCP78527 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC11.25□□□□□ -0.61
PRKDCP78527 SERBP1P2-201ENST00000436888 1164 ntBASIC11.25□□□□□ -0.61
PRKDCP78527 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC11.25□□□□□ -0.61
PRKDCP78527 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC11.25□□□□□ -0.61
PRKDCP78527 AC018695.6-201ENST00000614011 534 ntBASIC11.25□□□□□ -0.61
PRKDCP78527 ENPP7P14-201ENST00000621765 1040 ntBASIC11.25□□□□□ -0.61
PRKDCP78527 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
PRKDCP78527 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
PRKDCP78527 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
PRKDCP78527 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC11.25□□□□□ -0.61
PRKDCP78527 IL9RP3-201ENST00000442856 1674 ntBASIC11.25□□□□□ -0.61
PRKDCP78527 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PRKDCP78527 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC11.25□□□□□ -0.61
PRKDCP78527 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
PRKDCP78527 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
PRKDCP78527 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
PRKDCP78527 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC11.25□□□□□ -0.61
PRKDCP78527 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC11.25□□□□□ -0.61
PRKDCP78527 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
PRKDCP78527 NAMA-206ENST00000605377 509 ntTSL 5 BASIC11.25□□□□□ -0.61
PRKDCP78527 AL023803.2-201ENST00000620080 638 ntBASIC11.25□□□□□ -0.61
PRKDCP78527 AL691432.1-201ENST00000596308 1422 ntBASIC11.25□□□□□ -0.61
PRKDCP78527 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC11.25□□□□□ -0.61
PRKDCP78527 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC11.25□□□□□ -0.61
PRKDCP78527 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC11.25□□□□□ -0.61
PRKDCP78527 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
PRKDCP78527 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC11.25□□□□□ -0.61
PRKDCP78527 KRT8P4-201ENST00000509735 1454 ntBASIC11.25□□□□□ -0.61
PRKDCP78527 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC11.24□□□□□ -0.61
PRKDCP78527 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 SUN1-204ENST00000403868 978 ntTSL 2 BASIC11.24□□□□□ -0.61
PRKDCP78527 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 TUBB8P8-201ENST00000458717 1058 ntBASIC11.24□□□□□ -0.61
PRKDCP78527 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC11.24□□□□□ -0.61
PRKDCP78527 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC11.24□□□□□ -0.61
PRKDCP78527 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC11.24□□□□□ -0.61
PRKDCP78527 TBC1D3J-201ENST00000620719 1426 ntBASIC11.24□□□□□ -0.61
PRKDCP78527 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
PRKDCP78527 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
PRKDCP78527 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
PRKDCP78527 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC11.24□□□□□ -0.61
PRKDCP78527 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC11.24□□□□□ -0.61
PRKDCP78527 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 TUBB8P12-201ENST00000308911 1335 ntBASIC11.24□□□□□ -0.61
PRKDCP78527 TUBB7P-202ENST00000428444 1305 ntBASIC11.24□□□□□ -0.61
PRKDCP78527 TUBB8P7-204ENST00000567960 1332 ntBASIC11.24□□□□□ -0.61
PRKDCP78527 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC11.24□□□□□ -0.61
PRKDCP78527 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 CHMP1AP1-201ENST00000445563 662 ntBASIC11.24□□□□□ -0.61
PRKDCP78527 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC11.24□□□□□ -0.61
PRKDCP78527 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC11.24□□□□□ -0.61
PRKDCP78527 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC11.24□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms