Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
IRX4P78413 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
IRX4P78413 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
IRX4P78413 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC16.79■□□□□ 0.28
IRX4P78413 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
IRX4P78413 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
IRX4P78413 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
IRX4P78413 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC16.78■□□□□ 0.28
IRX4P78413 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
IRX4P78413 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
IRX4P78413 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 SPDYE7P-202ENST00000420373 878 ntBASIC16.78■□□□□ 0.28
IRX4P78413 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.78■□□□□ 0.28
IRX4P78413 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 SPDYE14P-201ENST00000442619 822 ntBASIC16.78■□□□□ 0.28
IRX4P78413 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 AC097493.3-201ENST00000509725 367 ntBASIC16.78■□□□□ 0.28
IRX4P78413 AC107918.2-201ENST00000530817 355 ntBASIC16.78■□□□□ 0.28
IRX4P78413 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.78■□□□□ 0.28
IRX4P78413 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.78■□□□□ 0.28
IRX4P78413 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.78■□□□□ 0.28
IRX4P78413 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
IRX4P78413 AL161645.1-201ENST00000622716 1255 ntBASIC16.78■□□□□ 0.28
IRX4P78413 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC16.78■□□□□ 0.28
IRX4P78413 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC16.78■□□□□ 0.28
IRX4P78413 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.78■□□□□ 0.28
IRX4P78413 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
IRX4P78413 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.78■□□□□ 0.28
IRX4P78413 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.78■□□□□ 0.28
IRX4P78413 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.78■□□□□ 0.28
IRX4P78413 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
IRX4P78413 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.78■□□□□ 0.28
IRX4P78413 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
IRX4P78413 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.78■□□□□ 0.28
IRX4P78413 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
IRX4P78413 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
IRX4P78413 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
IRX4P78413 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
IRX4P78413 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
IRX4P78413 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
IRX4P78413 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
IRX4P78413 AC024909.3-201ENST00000611513 2257 ntBASIC16.77■□□□□ 0.28
IRX4P78413 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
IRX4P78413 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
IRX4P78413 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
IRX4P78413 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.77■□□□□ 0.28
IRX4P78413 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.77■□□□□ 0.28
IRX4P78413 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
IRX4P78413 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
IRX4P78413 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
IRX4P78413 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
IRX4P78413 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
IRX4P78413 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.77■□□□□ 0.28
IRX4P78413 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
IRX4P78413 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.77■□□□□ 0.28
IRX4P78413 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.77■□□□□ 0.28
IRX4P78413 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.77■□□□□ 0.28
IRX4P78413 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.77■□□□□ 0.28
IRX4P78413 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.77■□□□□ 0.28
IRX4P78413 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.77■□□□□ 0.28
IRX4P78413 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.77■□□□□ 0.28
IRX4P78413 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.77■□□□□ 0.28
IRX4P78413 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.77■□□□□ 0.28
IRX4P78413 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
IRX4P78413 AL158211.3-201ENST00000607385 239 ntBASIC16.77■□□□□ 0.28
IRX4P78413 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC16.77■□□□□ 0.28
IRX4P78413 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
IRX4P78413 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
IRX4P78413 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.77■□□□□ 0.28
IRX4P78413 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.77■□□□□ 0.27
IRX4P78413 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
IRX4P78413 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.77■□□□□ 0.27
IRX4P78413 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.77■□□□□ 0.27
IRX4P78413 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
IRX4P78413 ME2P1-201ENST00000426028 1970 ntBASIC16.77■□□□□ 0.27
IRX4P78413 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
IRX4P78413 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms