Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC4P56524 AC132872.4-202ENST00000622924 2756 ntBASIC16.78■□□□□ 0.28
HDAC4P56524 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC4P56524 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC4P56524 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.78■□□□□ 0.28
HDAC4P56524 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC4P56524 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.78■□□□□ 0.28
HDAC4P56524 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC4P56524 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.78■□□□□ 0.28
HDAC4P56524 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.78■□□□□ 0.28
HDAC4P56524 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
HDAC4P56524 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC4P56524 AP005117.1-202ENST00000581724 1908 ntBASIC16.78■□□□□ 0.28
HDAC4P56524 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.78■□□□□ 0.28
HDAC4P56524 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC4P56524 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
HDAC4P56524 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.78■□□□□ 0.28
HDAC4P56524 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.77■□□□□ 0.28
HDAC4P56524 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 BNIP3P1-202ENST00000550043 1585 ntBASIC16.77■□□□□ 0.28
HDAC4P56524 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.77■□□□□ 0.28
HDAC4P56524 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.77■□□□□ 0.28
HDAC4P56524 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
HDAC4P56524 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.77■□□□□ 0.28
HDAC4P56524 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.77■□□□□ 0.28
HDAC4P56524 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.77■□□□□ 0.28
HDAC4P56524 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.77■□□□□ 0.28
HDAC4P56524 HLA-J-203ENST00000494367 1087 ntBASIC16.77■□□□□ 0.28
HDAC4P56524 AC243562.2-201ENST00000561247 970 ntBASIC16.77■□□□□ 0.28
HDAC4P56524 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.77■□□□□ 0.28
HDAC4P56524 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.77■□□□□ 0.28
HDAC4P56524 AP001160.2-201ENST00000596071 487 ntBASIC16.77■□□□□ 0.28
HDAC4P56524 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.77■□□□□ 0.28
HDAC4P56524 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.77■□□□□ 0.28
HDAC4P56524 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
HDAC4P56524 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
HDAC4P56524 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.77■□□□□ 0.28
HDAC4P56524 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HDAC4P56524 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
HDAC4P56524 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.27
HDAC4P56524 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.77■□□□□ 0.27
HDAC4P56524 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
HDAC4P56524 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.77■□□□□ 0.27
HDAC4P56524 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.77■□□□□ 0.27
HDAC4P56524 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HDAC4P56524 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
HDAC4P56524 HYMAI-201ENST00000635591 3347 ntBASIC16.76■□□□□ 0.27
HDAC4P56524 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
HDAC4P56524 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDAC4P56524 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDAC4P56524 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.76■□□□□ 0.27
HDAC4P56524 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.76■□□□□ 0.27
HDAC4P56524 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HDAC4P56524 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
HDAC4P56524 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.76■□□□□ 0.27
HDAC4P56524 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HDAC4P56524 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.76■□□□□ 0.27
HDAC4P56524 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDAC4P56524 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDAC4P56524 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.76■□□□□ 0.27
HDAC4P56524 AL139010.1-201ENST00000454878 894 ntBASIC16.76■□□□□ 0.27
HDAC4P56524 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.76■□□□□ 0.27
HDAC4P56524 AC109322.1-201ENST00000524499 1264 ntBASIC16.76■□□□□ 0.27
HDAC4P56524 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.76■□□□□ 0.27
HDAC4P56524 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.76■□□□□ 0.27
HDAC4P56524 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.76■□□□□ 0.27
HDAC4P56524 AC079781.4-201ENST00000641908 219 ntBASIC16.76■□□□□ 0.27
HDAC4P56524 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HDAC4P56524 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDAC4P56524 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDAC4P56524 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDAC4P56524 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDAC4P56524 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
HDAC4P56524 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.76■□□□□ 0.27
HDAC4P56524 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDAC4P56524 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
HDAC4P56524 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
HDAC4P56524 CYP4F24P-201ENST00000586049 1580 ntBASIC16.76■□□□□ 0.27
HDAC4P56524 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.76■□□□□ 0.27
HDAC4P56524 AC063926.3-201ENST00000624734 5658 ntBASIC16.76■□□□□ 0.27
HDAC4P56524 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDAC4P56524 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.76■□□□□ 0.27
HDAC4P56524 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms