Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC092183.1-201ENST00000469884 875 ntBASIC15.23■□□□□ 0.03
LIM2P55344 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC15.23■□□□□ 0.03
LIM2P55344 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.23■□□□□ 0.03
LIM2P55344 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.23■□□□□ 0.03
LIM2P55344 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.23■□□□□ 0.03
LIM2P55344 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.23■□□□□ 0.03
LIM2P55344 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.23■□□□□ 0.03
LIM2P55344 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIM2P55344 AL136317.3-201ENST00000618497 906 ntBASIC15.23■□□□□ 0.03
LIM2P55344 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.23■□□□□ 0.03
LIM2P55344 AC134407.2-201ENST00000625089 1978 ntBASIC15.23■□□□□ 0.03
LIM2P55344 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.23■□□□□ 0.03
LIM2P55344 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIM2P55344 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
LIM2P55344 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIM2P55344 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIM2P55344 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
LIM2P55344 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIM2P55344 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.23■□□□□ 0.03
LIM2P55344 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.23■□□□□ 0.03
LIM2P55344 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIM2P55344 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.23■□□□□ 0.03
LIM2P55344 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.23■□□□□ 0.03
LIM2P55344 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.23■□□□□ 0.03
LIM2P55344 AL035456.1-201ENST00000456064 1369 ntBASIC15.23■□□□□ 0.03
LIM2P55344 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
LIM2P55344 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
LIM2P55344 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
LIM2P55344 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.22■□□□□ 0.03
LIM2P55344 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 AC104640.1-201ENST00000562617 2109 ntBASIC15.22■□□□□ 0.03
LIM2P55344 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
LIM2P55344 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.22■□□□□ 0.03
LIM2P55344 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.22■□□□□ 0.03
LIM2P55344 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.22■□□□□ 0.03
LIM2P55344 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC15.22■□□□□ 0.03
LIM2P55344 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.22■□□□□ 0.03
LIM2P55344 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.22■□□□□ 0.03
LIM2P55344 AC015911.4-201ENST00000588022 1070 ntBASIC15.22■□□□□ 0.03
LIM2P55344 RN7SL828P-201ENST00000607615 303 ntBASIC15.22■□□□□ 0.03
LIM2P55344 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
LIM2P55344 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.22■□□□□ 0.03
LIM2P55344 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.22■□□□□ 0.03
LIM2P55344 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.22■□□□□ 0.03
LIM2P55344 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.22■□□□□ 0.03
LIM2P55344 CYP4F24P-201ENST00000586049 1580 ntBASIC15.22■□□□□ 0.03
LIM2P55344 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
LIM2P55344 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
LIM2P55344 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIM2P55344 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIM2P55344 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
LIM2P55344 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIM2P55344 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIM2P55344 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.21■□□□□ 0.03
LIM2P55344 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIM2P55344 TUBB3P1-201ENST00000405796 1332 ntBASIC15.21■□□□□ 0.03
LIM2P55344 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIM2P55344 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.21■□□□□ 0.03
LIM2P55344 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.21■□□□□ 0.03
LIM2P55344 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LIM2P55344 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.21■□□□□ 0.03
LIM2P55344 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.21■□□□□ 0.03
LIM2P55344 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.21■□□□□ 0.03
LIM2P55344 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LIM2P55344 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
LIM2P55344 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.21■□□□□ 0.03
LIM2P55344 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIM2P55344 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
LIM2P55344 AC004987.2-201ENST00000395959 1148 ntBASIC15.21■□□□□ 0.03
LIM2P55344 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.21■□□□□ 0.03
LIM2P55344 PON3-203ENST00000427422 894 ntTSL 3 BASIC15.21■□□□□ 0.03
LIM2P55344 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.21■□□□□ 0.03
LIM2P55344 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.21■□□□□ 0.03
LIM2P55344 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.21■□□□□ 0.03
LIM2P55344 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.21■□□□□ 0.03
LIM2P55344 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.21■□□□□ 0.03
LIM2P55344 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.21■□□□□ 0.03
LIM2P55344 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LIM2P55344 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIM2P55344 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LIM2P55344 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIM2P55344 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
LIM2P55344 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms