Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC19.01■□□□□ 0.63
BRCA1P38398 AC132192.2-201ENST00000596206 1147 ntBASIC19.01■□□□□ 0.63
BRCA1P38398 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC19.01■□□□□ 0.63
BRCA1P38398 AL023803.2-201ENST00000620080 638 ntBASIC19.01■□□□□ 0.63
BRCA1P38398 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
BRCA1P38398 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
BRCA1P38398 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC19■□□□□ 0.63
BRCA1P38398 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
BRCA1P38398 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC19■□□□□ 0.63
BRCA1P38398 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
BRCA1P38398 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19■□□□□ 0.63
BRCA1P38398 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
BRCA1P38398 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
BRCA1P38398 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
BRCA1P38398 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
BRCA1P38398 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC19■□□□□ 0.63
BRCA1P38398 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC19■□□□□ 0.63
BRCA1P38398 AL139094.1-201ENST00000405549 1188 ntBASIC19■□□□□ 0.63
BRCA1P38398 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC19■□□□□ 0.63
BRCA1P38398 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC19■□□□□ 0.63
BRCA1P38398 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC19■□□□□ 0.63
BRCA1P38398 WDR7-208ENST00000589935 544 ntTSL 4 BASIC19■□□□□ 0.63
BRCA1P38398 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC19■□□□□ 0.63
BRCA1P38398 AC073352.2-201ENST00000609385 439 ntBASIC19■□□□□ 0.63
BRCA1P38398 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
BRCA1P38398 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19■□□□□ 0.63
BRCA1P38398 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
BRCA1P38398 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
BRCA1P38398 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
BRCA1P38398 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
BRCA1P38398 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19■□□□□ 0.63
BRCA1P38398 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.99■□□□□ 0.63
BRCA1P38398 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BRCA1P38398 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BRCA1P38398 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BRCA1P38398 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BRCA1P38398 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
BRCA1P38398 Z97180.1-201ENST00000445173 988 ntBASIC18.99■□□□□ 0.63
BRCA1P38398 RNMTL1P1-201ENST00000454103 560 ntBASIC18.99■□□□□ 0.63
BRCA1P38398 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
BRCA1P38398 AC019193.1-201ENST00000506678 823 ntBASIC18.99■□□□□ 0.63
BRCA1P38398 OR10B1P-201ENST00000601666 907 ntBASIC18.99■□□□□ 0.63
BRCA1P38398 AL805961.1-203ENST00000641078 1258 ntBASIC18.99■□□□□ 0.63
BRCA1P38398 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.99■□□□□ 0.63
BRCA1P38398 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BRCA1P38398 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
BRCA1P38398 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.99■□□□□ 0.63
BRCA1P38398 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
BRCA1P38398 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
BRCA1P38398 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
BRCA1P38398 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC18.99■□□□□ 0.63
BRCA1P38398 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
BRCA1P38398 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC18.99■□□□□ 0.63
BRCA1P38398 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC18.99■□□□□ 0.63
BRCA1P38398 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC18.99■□□□□ 0.63
BRCA1P38398 WT1-AS_6.1-201ENST00000614919 121 ntBASIC18.99■□□□□ 0.63
BRCA1P38398 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
BRCA1P38398 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
BRCA1P38398 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRCA1P38398 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.98■□□□□ 0.63
BRCA1P38398 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.98■□□□□ 0.63
BRCA1P38398 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BRCA1P38398 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC18.98■□□□□ 0.63
BRCA1P38398 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC18.98■□□□□ 0.63
BRCA1P38398 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC18.98■□□□□ 0.63
BRCA1P38398 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRCA1P38398 AC141586.5-201ENST00000624546 2050 ntBASIC18.98■□□□□ 0.63
BRCA1P38398 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
BRCA1P38398 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRCA1P38398 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRCA1P38398 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRCA1P38398 TPM3P8-201ENST00000330554 643 ntBASIC18.98■□□□□ 0.63
BRCA1P38398 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BRCA1P38398 CHMP1AP1-201ENST00000445563 662 ntBASIC18.98■□□□□ 0.63
BRCA1P38398 AC005740.2-201ENST00000511085 419 ntBASIC18.98■□□□□ 0.63
BRCA1P38398 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC18.98■□□□□ 0.63
BRCA1P38398 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC18.98■□□□□ 0.63
BRCA1P38398 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC18.98■□□□□ 0.63
BRCA1P38398 CENPX-208ENST00000584347 799 ntTSL 2 BASIC18.98■□□□□ 0.63
BRCA1P38398 AC004899.1-201ENST00000424687 1714 ntBASIC18.98■□□□□ 0.63
BRCA1P38398 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BRCA1P38398 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BRCA1P38398 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRCA1P38398 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC18.98■□□□□ 0.63
BRCA1P38398 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRCA1P38398 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.97■□□□□ 0.63
BRCA1P38398 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
BRCA1P38398 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
BRCA1P38398 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRCA1P38398 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.97■□□□□ 0.63
BRCA1P38398 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRCA1P38398 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
BRCA1P38398 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
BRCA1P38398 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC18.97■□□□□ 0.63
BRCA1P38398 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
BRCA1P38398 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRCA1P38398 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRCA1P38398 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.97■□□□□ 0.63
BRCA1P38398 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
BRCA1P38398 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms