Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
HOXC9P31274 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC9P31274 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC9P31274 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC20.99■□□□□ 0.95
HOXC9P31274 AC026954.1-201ENST00000429771 1293 ntBASIC20.99■□□□□ 0.95
HOXC9P31274 AC016694.1-201ENST00000434179 700 ntBASIC20.99■□□□□ 0.95
HOXC9P31274 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC20.99■□□□□ 0.95
HOXC9P31274 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC20.99■□□□□ 0.95
HOXC9P31274 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC20.99■□□□□ 0.95
HOXC9P31274 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
HOXC9P31274 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC20.99■□□□□ 0.95
HOXC9P31274 AC011477.6-201ENST00000604980 1927 ntBASIC20.99■□□□□ 0.95
HOXC9P31274 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC9P31274 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC20.99■□□□□ 0.95
HOXC9P31274 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC20.99■□□□□ 0.95
HOXC9P31274 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC9P31274 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC9P31274 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
HOXC9P31274 TK1-203ENST00000588734 1681 ntTSL 2 BASIC20.99■□□□□ 0.95
HOXC9P31274 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC9P31274 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC9P31274 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
HOXC9P31274 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC9P31274 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
HOXC9P31274 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC20.98■□□□□ 0.95
HOXC9P31274 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC20.98■□□□□ 0.95
HOXC9P31274 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC9P31274 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC9P31274 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC9P31274 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
HOXC9P31274 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
HOXC9P31274 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC20.98■□□□□ 0.95
HOXC9P31274 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC20.98■□□□□ 0.95
HOXC9P31274 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC20.98■□□□□ 0.95
HOXC9P31274 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
HOXC9P31274 GAPDHP40-201ENST00000505218 1006 ntBASIC20.98■□□□□ 0.95
HOXC9P31274 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
HOXC9P31274 IFT20-206ENST00000578122 834 ntTSL 2 BASIC20.98■□□□□ 0.95
HOXC9P31274 IFT20-208ENST00000578985 831 ntTSL 3 BASIC20.98■□□□□ 0.95
HOXC9P31274 RN7SL219P-201ENST00000582872 296 ntBASIC20.98■□□□□ 0.95
HOXC9P31274 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC20.98■□□□□ 0.95
HOXC9P31274 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
HOXC9P31274 GPR182-203ENST00000622922 591 ntBASIC20.98■□□□□ 0.95
HOXC9P31274 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC9P31274 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC9P31274 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC9P31274 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC20.98■□□□□ 0.95
HOXC9P31274 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
HOXC9P31274 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC9P31274 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC20.98■□□□□ 0.95
HOXC9P31274 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
HOXC9P31274 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC9P31274 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC9P31274 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC9P31274 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC9P31274 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC9P31274 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC9P31274 ACKR1-201ENST00000368121 1240 ntBASIC20.97■□□□□ 0.95
HOXC9P31274 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
HOXC9P31274 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC20.97■□□□□ 0.95
HOXC9P31274 AL133267.1-201ENST00000398220 340 ntBASIC20.97■□□□□ 0.95
HOXC9P31274 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
HOXC9P31274 FAM21FP-201ENST00000426241 1131 ntBASIC20.97■□□□□ 0.95
HOXC9P31274 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
HOXC9P31274 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC20.97■□□□□ 0.95
HOXC9P31274 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC9P31274 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC20.97■□□□□ 0.95
HOXC9P31274 FAM8A2P-201ENST00000528813 1142 ntBASIC20.97■□□□□ 0.95
HOXC9P31274 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC9P31274 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC9P31274 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC20.97■□□□□ 0.95
HOXC9P31274 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC20.97■□□□□ 0.95
HOXC9P31274 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC20.97■□□□□ 0.95
HOXC9P31274 AL606495.2-201ENST00000605867 535 ntBASIC20.97■□□□□ 0.95
HOXC9P31274 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC9P31274 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
HOXC9P31274 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC9P31274 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC9P31274 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
HOXC9P31274 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
HOXC9P31274 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC9P31274 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC9P31274 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC9P31274 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC20.97■□□□□ 0.95
HOXC9P31274 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
HOXC9P31274 AD000864.1-201ENST00000624076 2295 ntBASIC20.97■□□□□ 0.95
HOXC9P31274 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
HOXC9P31274 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
HOXC9P31274 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC9P31274 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC9P31274 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC9P31274 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC20.96■□□□□ 0.95
HOXC9P31274 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC9P31274 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
HOXC9P31274 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
HOXC9P31274 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC9P31274 RAC2-202ENST00000401529 569 ntTSL 4 BASIC20.96■□□□□ 0.95
HOXC9P31274 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
HOXC9P31274 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC20.96■□□□□ 0.95
HOXC9P31274 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms