Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.9■□□□□ 0.62
HMGB1P09429 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
HMGB1P09429 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.9■□□□□ 0.62
HMGB1P09429 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HMGB1P09429 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.9■□□□□ 0.62
HMGB1P09429 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HMGB1P09429 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB1P09429 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.62
HMGB1P09429 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
HMGB1P09429 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
HMGB1P09429 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
HMGB1P09429 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
HMGB1P09429 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB1P09429 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB1P09429 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
HMGB1P09429 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB1P09429 FUK-207ENST00000571514 3054 ntTSL 2 BASIC18.89■□□□□ 0.61
HMGB1P09429 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB1P09429 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
HMGB1P09429 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB1P09429 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB1P09429 SPDYE17-201ENST00000412399 783 ntBASIC18.89■□□□□ 0.61
HMGB1P09429 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC18.89■□□□□ 0.61
HMGB1P09429 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB1P09429 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB1P09429 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.89■□□□□ 0.61
HMGB1P09429 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18.89■□□□□ 0.61
HMGB1P09429 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.89■□□□□ 0.61
HMGB1P09429 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB1P09429 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB1P09429 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB1P09429 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB1P09429 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB1P09429 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB1P09429 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
HMGB1P09429 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC18.89■□□□□ 0.61
HMGB1P09429 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC18.89■□□□□ 0.61
HMGB1P09429 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC18.89■□□□□ 0.61
HMGB1P09429 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
HMGB1P09429 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB1P09429 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB1P09429 LTF-203ENST00000426532 2494 ntTSL 2 BASIC18.89■□□□□ 0.61
HMGB1P09429 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
HMGB1P09429 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC18.88■□□□□ 0.61
HMGB1P09429 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC18.88■□□□□ 0.61
HMGB1P09429 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
HMGB1P09429 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGB1P09429 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC18.88■□□□□ 0.61
HMGB1P09429 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.88■□□□□ 0.61
HMGB1P09429 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
HMGB1P09429 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGB1P09429 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.88■□□□□ 0.61
HMGB1P09429 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGB1P09429 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC18.88■□□□□ 0.61
HMGB1P09429 AC018892.3-201ENST00000623986 2499 ntBASIC18.88■□□□□ 0.61
HMGB1P09429 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGB1P09429 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGB1P09429 RPS19-201ENST00000221975 500 ntTSL 3 BASIC18.88■□□□□ 0.61
HMGB1P09429 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGB1P09429 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
HMGB1P09429 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.88■□□□□ 0.61
HMGB1P09429 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.88■□□□□ 0.61
HMGB1P09429 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.88■□□□□ 0.61
HMGB1P09429 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.88■□□□□ 0.61
HMGB1P09429 SUOX-214ENST00000551841 906 ntTSL 3 BASIC18.88■□□□□ 0.61
HMGB1P09429 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC18.88■□□□□ 0.61
HMGB1P09429 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGB1P09429 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.88■□□□□ 0.61
HMGB1P09429 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
HMGB1P09429 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.88■□□□□ 0.61
HMGB1P09429 AC079781.4-201ENST00000641908 219 ntBASIC18.88■□□□□ 0.61
HMGB1P09429 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HMGB1P09429 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC18.88■□□□□ 0.61
HMGB1P09429 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.88■□□□□ 0.61
HMGB1P09429 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
HMGB1P09429 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HMGB1P09429 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HMGB1P09429 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC18.88■□□□□ 0.61
HMGB1P09429 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC18.88■□□□□ 0.61
HMGB1P09429 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC18.88■□□□□ 0.61
HMGB1P09429 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGB1P09429 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
HMGB1P09429 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
HMGB1P09429 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC18.88■□□□□ 0.61
HMGB1P09429 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGB1P09429 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGB1P09429 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18.87■□□□□ 0.61
HMGB1P09429 FO393414.2-201ENST00000405153 598 ntBASIC18.87■□□□□ 0.61
HMGB1P09429 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.87■□□□□ 0.61
HMGB1P09429 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms