Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.7■□□□□ 0.1
SIX3O95343 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.7■□□□□ 0.1
SIX3O95343 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.7■□□□□ 0.1
SIX3O95343 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.7■□□□□ 0.1
SIX3O95343 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.7■□□□□ 0.1
SIX3O95343 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
SIX3O95343 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.7■□□□□ 0.1
SIX3O95343 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 AL671277.1-201ENST00000429656 993 ntBASIC15.7■□□□□ 0.1
SIX3O95343 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 AC105233.2-201ENST00000523697 349 ntBASIC15.7■□□□□ 0.1
SIX3O95343 AF228730.5-201ENST00000530288 346 ntBASIC15.7■□□□□ 0.1
SIX3O95343 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.7■□□□□ 0.1
SIX3O95343 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.7■□□□□ 0.1
SIX3O95343 AC061975.2-201ENST00000581722 295 ntBASIC15.7■□□□□ 0.1
SIX3O95343 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.7■□□□□ 0.1
SIX3O95343 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.7■□□□□ 0.1
SIX3O95343 AC027307.2-201ENST00000591252 911 ntBASIC15.7■□□□□ 0.1
SIX3O95343 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.7■□□□□ 0.1
SIX3O95343 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.7■□□□□ 0.1
SIX3O95343 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.7■□□□□ 0.1
SIX3O95343 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
SIX3O95343 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.7■□□□□ 0.1
SIX3O95343 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.7■□□□□ 0.1
SIX3O95343 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.69■□□□□ 0.1
SIX3O95343 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
SIX3O95343 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.69■□□□□ 0.1
SIX3O95343 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
SIX3O95343 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
SIX3O95343 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.69■□□□□ 0.1
SIX3O95343 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
SIX3O95343 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.69■□□□□ 0.1
SIX3O95343 TFAMP1-201ENST00000412727 736 ntBASIC15.69■□□□□ 0.1
SIX3O95343 FAM58CP-201ENST00000435741 640 ntBASIC15.69■□□□□ 0.1
SIX3O95343 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
SIX3O95343 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
SIX3O95343 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
SIX3O95343 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.69■□□□□ 0.1
SIX3O95343 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
SIX3O95343 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.69■□□□□ 0.1
SIX3O95343 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
SIX3O95343 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.69■□□□□ 0.1
SIX3O95343 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.69■□□□□ 0.1
SIX3O95343 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.69■□□□□ 0.1
SIX3O95343 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC15.69■□□□□ 0.1
SIX3O95343 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.69■□□□□ 0.1
SIX3O95343 AC092902.6-201ENST00000641783 218 ntBASIC15.69■□□□□ 0.1
SIX3O95343 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
SIX3O95343 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.69■□□□□ 0.1
SIX3O95343 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.69■□□□□ 0.1
SIX3O95343 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SIX3O95343 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.69■□□□□ 0.1
SIX3O95343 AKAP8P1-201ENST00000434743 1349 ntBASIC15.68■□□□□ 0.1
SIX3O95343 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.68■□□□□ 0.1
SIX3O95343 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.68■□□□□ 0.1
SIX3O95343 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
SIX3O95343 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.68■□□□□ 0.1
SIX3O95343 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
SIX3O95343 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
SIX3O95343 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SIX3O95343 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SIX3O95343 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SIX3O95343 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.68■□□□□ 0.1
SIX3O95343 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.68■□□□□ 0.1
SIX3O95343 AC009090.5-201ENST00000624886 2285 ntBASIC15.68■□□□□ 0.1
SIX3O95343 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SIX3O95343 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms