Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.94□□□□□ -0.02
PRKNO60260 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
PRKNO60260 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PRKNO60260 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PRKNO60260 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.94□□□□□ -0.02
PRKNO60260 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PRKNO60260 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
PRKNO60260 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.94□□□□□ -0.02
PRKNO60260 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PRKNO60260 AL139010.1-201ENST00000454878 894 ntBASIC14.94□□□□□ -0.02
PRKNO60260 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.94□□□□□ -0.02
PRKNO60260 AC004890.2-204ENST00000481968 304 ntBASIC14.94□□□□□ -0.02
PRKNO60260 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PRKNO60260 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC14.94□□□□□ -0.02
PRKNO60260 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.94□□□□□ -0.02
PRKNO60260 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PRKNO60260 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
PRKNO60260 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.94□□□□□ -0.02
PRKNO60260 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PRKNO60260 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PRKNO60260 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
PRKNO60260 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
PRKNO60260 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PRKNO60260 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
PRKNO60260 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PRKNO60260 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC14.94□□□□□ -0.02
PRKNO60260 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
PRKNO60260 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PRKNO60260 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.94□□□□□ -0.02
PRKNO60260 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PRKNO60260 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PRKNO60260 CYP4F24P-201ENST00000586049 1580 ntBASIC14.94□□□□□ -0.02
PRKNO60260 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
PRKNO60260 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.93□□□□□ -0.02
PRKNO60260 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC14.93□□□□□ -0.02
PRKNO60260 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.93□□□□□ -0.02
PRKNO60260 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.93□□□□□ -0.02
PRKNO60260 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
PRKNO60260 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.93□□□□□ -0.02
PRKNO60260 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
PRKNO60260 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 MRPS18AP1-201ENST00000414458 589 ntBASIC14.93□□□□□ -0.02
PRKNO60260 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.93□□□□□ -0.02
PRKNO60260 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.93□□□□□ -0.02
PRKNO60260 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.93□□□□□ -0.02
PRKNO60260 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.93□□□□□ -0.02
PRKNO60260 INGX-202ENST00000489074 768 ntBASIC14.93□□□□□ -0.02
PRKNO60260 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 AC026979.3-201ENST00000607315 403 ntBASIC14.93□□□□□ -0.02
PRKNO60260 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.93□□□□□ -0.02
PRKNO60260 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.93□□□□□ -0.02
PRKNO60260 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
PRKNO60260 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.93□□□□□ -0.02
PRKNO60260 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PRKNO60260 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PRKNO60260 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.92□□□□□ -0.02
PRKNO60260 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PRKNO60260 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.92□□□□□ -0.02
PRKNO60260 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PRKNO60260 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.92□□□□□ -0.02
PRKNO60260 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PRKNO60260 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
PRKNO60260 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PRKNO60260 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PRKNO60260 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PRKNO60260 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PRKNO60260 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PRKNO60260 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PRKNO60260 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PRKNO60260 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PRKNO60260 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.92□□□□□ -0.02
PRKNO60260 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PRKNO60260 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PRKNO60260 MIR661-201ENST00000384842 89 ntBASIC14.92□□□□□ -0.02
PRKNO60260 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PRKNO60260 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.92□□□□□ -0.02
PRKNO60260 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.92□□□□□ -0.02
PRKNO60260 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.92□□□□□ -0.02
PRKNO60260 RNA5SP421-201ENST00000516864 134 ntBASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms