Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC13.15□□□□□ -0.3
SSSCA1O60232 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC13.15□□□□□ -0.3
SSSCA1O60232 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 AC139749.1-202ENST00000617529 3139 ntBASIC13.15□□□□□ -0.3
SSSCA1O60232 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 CICP23-201ENST00000605013 2741 ntBASIC13.15□□□□□ -0.3
SSSCA1O60232 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC13.15□□□□□ -0.3
SSSCA1O60232 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.15□□□□□ -0.3
SSSCA1O60232 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC13.15□□□□□ -0.3
SSSCA1O60232 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC13.15□□□□□ -0.3
SSSCA1O60232 LINC01101-201ENST00000622953 1884 ntBASIC13.15□□□□□ -0.3
SSSCA1O60232 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC13.15□□□□□ -0.3
SSSCA1O60232 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC13.15□□□□□ -0.3
SSSCA1O60232 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC13.15□□□□□ -0.3
SSSCA1O60232 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC13.15□□□□□ -0.3
SSSCA1O60232 AC104819.1-201ENST00000504587 486 ntBASIC13.15□□□□□ -0.3
SSSCA1O60232 AC093827.2-201ENST00000512654 315 ntBASIC13.15□□□□□ -0.3
SSSCA1O60232 AC107918.2-201ENST00000530817 355 ntBASIC13.15□□□□□ -0.3
SSSCA1O60232 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC13.15□□□□□ -0.3
SSSCA1O60232 AL160237.2-201ENST00000556165 472 ntBASIC13.15□□□□□ -0.3
SSSCA1O60232 AC005412.3-201ENST00000580309 715 ntBASIC13.15□□□□□ -0.3
SSSCA1O60232 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC13.15□□□□□ -0.3
SSSCA1O60232 WT1-AS_2.1-201ENST00000613208 137 ntBASIC13.15□□□□□ -0.3
SSSCA1O60232 BSG-214ENST00000614867 960 ntTSL 3 BASIC13.15□□□□□ -0.3
SSSCA1O60232 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC13.15□□□□□ -0.3
SSSCA1O60232 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.15□□□□□ -0.3
SSSCA1O60232 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC13.15□□□□□ -0.3
SSSCA1O60232 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
SSSCA1O60232 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC13.15□□□□□ -0.3
SSSCA1O60232 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC13.15□□□□□ -0.3
SSSCA1O60232 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC13.15□□□□□ -0.3
SSSCA1O60232 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC13.15□□□□□ -0.3
SSSCA1O60232 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SSSCA1O60232 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
SSSCA1O60232 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.31
SSSCA1O60232 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
SSSCA1O60232 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.31
SSSCA1O60232 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13.15□□□□□ -0.31
SSSCA1O60232 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC13.15□□□□□ -0.31
SSSCA1O60232 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 AP005117.1-201ENST00000584346 1413 ntBASIC13.14□□□□□ -0.31
SSSCA1O60232 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.14□□□□□ -0.31
SSSCA1O60232 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 AC090616.6-203ENST00000579186 1945 ntBASIC13.14□□□□□ -0.31
SSSCA1O60232 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
SSSCA1O60232 PTCHD3P3-201ENST00000403073 906 ntBASIC13.14□□□□□ -0.31
SSSCA1O60232 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC13.14□□□□□ -0.31
SSSCA1O60232 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 MIR5100-201ENST00000579544 119 ntBASIC13.14□□□□□ -0.31
SSSCA1O60232 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC13.14□□□□□ -0.31
SSSCA1O60232 AC092329.2-201ENST00000598402 547 ntBASIC13.14□□□□□ -0.31
SSSCA1O60232 LINC01023-201ENST00000606054 436 ntBASIC13.14□□□□□ -0.31
SSSCA1O60232 AP001269.4-201ENST00000609611 512 ntBASIC13.14□□□□□ -0.31
SSSCA1O60232 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
SSSCA1O60232 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC13.14□□□□□ -0.31
SSSCA1O60232 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.14□□□□□ -0.31
SSSCA1O60232 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SSSCA1O60232 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC13.14□□□□□ -0.31
SSSCA1O60232 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC13.14□□□□□ -0.31
SSSCA1O60232 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms