Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC3O15379 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.65■□□□□ 0.1
HDAC3O15379 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.65■□□□□ 0.1
HDAC3O15379 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC15.65■□□□□ 0.1
HDAC3O15379 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.65■□□□□ 0.1
HDAC3O15379 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC3O15379 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC3O15379 WASH6P-202ENST00000359512 1437 ntBASIC15.65■□□□□ 0.1
HDAC3O15379 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.65■□□□□ 0.1
HDAC3O15379 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC3O15379 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC3O15379 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC3O15379 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC3O15379 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC3O15379 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.65■□□□□ 0.1
HDAC3O15379 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC3O15379 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.65■□□□□ 0.1
HDAC3O15379 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC3O15379 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC3O15379 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
HDAC3O15379 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC3O15379 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC3O15379 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC3O15379 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.65■□□□□ 0.1
HDAC3O15379 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.65■□□□□ 0.1
HDAC3O15379 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HDAC3O15379 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.65■□□□□ 0.1
HDAC3O15379 AC106881.1-201ENST00000605849 3329 ntBASIC15.65■□□□□ 0.1
HDAC3O15379 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.64■□□□□ 0.1
HDAC3O15379 AC073439.1-201ENST00000624121 1774 ntBASIC15.64■□□□□ 0.1
HDAC3O15379 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.64■□□□□ 0.09
HDAC3O15379 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
HDAC3O15379 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.64■□□□□ 0.09
HDAC3O15379 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.64■□□□□ 0.09
HDAC3O15379 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.64■□□□□ 0.09
HDAC3O15379 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.64■□□□□ 0.09
HDAC3O15379 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.64■□□□□ 0.09
HDAC3O15379 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
HDAC3O15379 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.64■□□□□ 0.09
HDAC3O15379 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.64■□□□□ 0.09
HDAC3O15379 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
HDAC3O15379 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.64■□□□□ 0.09
HDAC3O15379 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
HDAC3O15379 AC012640.2-201ENST00000561606 901 ntBASIC15.64■□□□□ 0.09
HDAC3O15379 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.64■□□□□ 0.09
HDAC3O15379 AC002347.1-201ENST00000569543 541 ntBASIC15.64■□□□□ 0.09
HDAC3O15379 AL078644.1-201ENST00000609881 752 ntBASIC15.64■□□□□ 0.09
HDAC3O15379 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.64■□□□□ 0.09
HDAC3O15379 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.64■□□□□ 0.09
HDAC3O15379 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.64■□□□□ 0.09
HDAC3O15379 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
HDAC3O15379 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
HDAC3O15379 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.64■□□□□ 0.09
HDAC3O15379 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
HDAC3O15379 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.64■□□□□ 0.09
HDAC3O15379 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HDAC3O15379 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.64■□□□□ 0.09
HDAC3O15379 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
HDAC3O15379 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.64■□□□□ 0.09
HDAC3O15379 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
HDAC3O15379 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.63■□□□□ 0.09
HDAC3O15379 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HDAC3O15379 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.63■□□□□ 0.09
HDAC3O15379 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
HDAC3O15379 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HDAC3O15379 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
HDAC3O15379 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HDAC3O15379 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
HDAC3O15379 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
HDAC3O15379 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
HDAC3O15379 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.63■□□□□ 0.09
HDAC3O15379 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HDAC3O15379 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HDAC3O15379 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.63■□□□□ 0.09
HDAC3O15379 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HDAC3O15379 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
HDAC3O15379 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
HDAC3O15379 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.63■□□□□ 0.09
HDAC3O15379 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HDAC3O15379 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
HDAC3O15379 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.63■□□□□ 0.09
HDAC3O15379 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms