Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 PGR-210ENST00000619228 3038 ntTSL 5 BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 FAM86C2P-203ENST00000528684 1004 ntBASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 AC023157.3-201ENST00000619086 2088 ntBASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 ING5-213ENST00000636051 4199 ntTSL 5 BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMCH1Q9UPQ0 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 AC006486.2-201ENST00000624246 2199 ntBASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 ADH5P3-201ENST00000433842 1137 ntBASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 AC243562.1-201ENST00000560672 389 ntBASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIMCH1Q9UPQ0 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 MIR346-201ENST00000362234 95 ntBASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 FAM220BP-201ENST00000377689 816 ntBASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 PP14571-201ENST00000404327 934 ntTSL 2 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 AC023274.1-201ENST00000418278 595 ntBASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 FAM58CP-201ENST00000435741 640 ntBASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 AL109954.1-202ENST00000564051 2148 ntBASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 REXO1L1P-202ENST00000608646 1974 ntBASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMCH1Q9UPQ0 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms