Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 AC004987.2-201ENST00000395959 1148 ntBASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 AC245100.5-201ENST00000452108 331 ntBASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 SPIB-207ENST00000597855 564 ntTSL 4 BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SYNGAP1Q96PV0 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 AC005052.1-201ENST00000625181 2492 ntBASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 RPL28-204ENST00000431533 590 ntTSL 2 BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 HLA-DPB2-205ENST00000435074 1188 ntBASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 AC119751.2-201ENST00000504529 210 ntBASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 RPL28-206ENST00000558752 671 ntTSL 3 BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 AP005482.1-201ENST00000563722 1273 ntBASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SYNGAP1Q96PV0 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 ALOX12P2-203ENST00000570921 1945 ntBASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 AL592424.1-201ENST00000563624 1536 ntBASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 AL691432.1-201ENST00000596308 1422 ntBASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 BOLA2P3-201ENST00000404566 256 ntBASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 RN7SL399P-201ENST00000471648 279 ntBASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC18.15■□□□□ 0.5
SYNGAP1Q96PV0 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.14■□□□□ 0.5
SYNGAP1Q96PV0 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SYNGAP1Q96PV0 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms